Pseudocitrobacter vendiensis (LMG 31042, CCUG 73096, JCM 34135)

Name: Pseudocitrobacter vendiensis (LMG 31042, CCUG 73096, JCM 34135)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164735

Type strain

Strain Designation CPO20170097

Culture col. no. LMG 31042 CCUG 73096 JCM 34135 CPO20170097

NCBI tax ID(s) 2488306

Special Collections CCUG JCM Literature strains

History JCM <-- LMG 31042 <-- F. Hansen; Statens Serum Inst., Denmark <-- Aalborg Univ. Hosp., Denmark; CPO20170097.

Links

Pseudocitrobacter vendiensis CPO20170097 is an anaerobe, Gram-negative, motile bacterium that was isolated from Danish patient in October 2017.

Gram-negative motile rod-shaped anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 411811

LMG 31042,JCM 34135,CCUG 73096

@ref 20215

Last LPSN update 2026-05-29 08:45:29

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Pseudocitrobacter

Species Pseudocitrobacter vendiensis

Full scientific name Pseudocitrobacter vendiensis Kämpfer et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
69589	negative	2-3 µm	0.1 µm	rod-shaped

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

69589

Oxygen toleranceanaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69589	16810 ChEBI	2-oxoglutarate	-	assimilation
69589	17879 ChEBI	4-hydroxybenzoate	+	assimilation
69589	18305 ChEBI	arbutin	+	assimilation
69589	16383 ChEBI	cis-aconitate	+	assimilation
69589	16947 ChEBI	citrate	+	assimilation
69589	18391 ChEBI	D-gluconate	-	assimilation
69589	17634 ChEBI	D-glucose	+	builds acid from
69589	16899 ChEBI	D-mannitol	+	builds acid from
69589	65327 ChEBI	D-xylose	+	builds acid from
69589	4853 ChEBI	esculin	-	hydrolysis
69589	4853 ChEBI	esculin	+	hydrolysis
69589	16813 ChEBI	galactitol	-	builds acid from
69589	30921 ChEBI	glutarate	+	assimilation
69589	30849 ChEBI	L-arabinose	+	builds acid from
69589	15729 ChEBI	L-ornithine	+	assimilation
69589	62345 ChEBI	L-rhamnose	+	builds acid from
69589	17716 ChEBI	lactose	+	builds acid from
69589	15792 ChEBI	malonate	-	assimilation
69589	17306 ChEBI	maltose	+	builds acid from
69589	37684 ChEBI	mannose	+	builds acid from
69589	28053 ChEBI	melibiose	-	builds acid from
69589	16634 ChEBI	raffinose	-	builds acid from
69589	15963 ChEBI	ribitol	-	builds acid from
69589	17814 ChEBI	salicin	+	builds acid from
69589	17992 ChEBI	sucrose	-	builds acid from
69589	27082 ChEBI	trehalose	+	builds acid from
69589	27897 ChEBI	tryptophan	-	energy source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
69589	15688 ChEBI	acetoin
69589	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
69589	15688 ChEBI	acetoin	-
69589	35581 ChEBI	indole		-

Enzymes

@ref	Value	Activity	Ec
69589	arginine decarboxylase	-	4.1.1.19
69589	cytochrome oxidase	-	1.9.3.1
69589	lysine decarboxylase	-	4.1.1.18
69589	ornithine decarboxylase	-	4.1.1.17
69589	tryptophan deaminase	+	4.1.99.1
69589	tryptophan deaminase	-	4.1.99.1
69589	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

69589

Fatty acid	Percentage
C16:0	28.4
C18:1 w7c	22.9
C17:0 cyclo	13.2
C16:1?7c/C15:0 Iso 2OH	9.1
C16:1 iso I/C14:0 3OH	8.1
C14:0	7.2
C19:0 cyclo w8c	5.5
C12:0	3.7
C15:0	1.1
Inknown 14.502	0.9

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Sampling date
67770	Danish patient in October 2017	Homo sapiens				October 2017
69589	a Danish patient in October 2017 from ChromID carba smart agar (bioMérieux) grown overnight at 37 °C (ambient atmosphere).	Homo sapiens	Denmark	DNK	Europe

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pseudocitrobacter vendiensis 16S ribosomal RNA gene, partial sequence	MK170368	1542		2488306

GC content

@ref	GC-content (mol%)	Method
67770	53.15	genome sequence analysis

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing: Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov.	Kampfer P, Fuglsang-Damgaard D, Overballe-Petersen S, Hasman H, Hammerum AM, Fuursted K, Blom J, Glaeser SP, Hansen F	Int J Syst Evol Microbiol	10.1099/ijsem.0.003918	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69589	Peter Kämpfer, David Fuglsang-Damgaard, Søren Overballe-Petersen, Henrik Hasman, Anette M. Hammerum, Kurt Fuursted, Jochen Blom, Stefanie P. Glaeser and Frank Hansen: Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing: Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov.. IJSEM 70: 2019 ( DOI 10.1099/ijsem.0.003918 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudocitrobacter vendiensis (LMG 31042, CCUG 73096, JCM 34135)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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