Eikenella longinqua (NML 02-A-017, NCTC 14179, LMG 30896)

Name: Eikenella longinqua (NML 02-A-017, NCTC 14179, LMG 30896)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164734

Type strain

Culture col. no. NML 02-A-017 NCTC 14179 LMG 30896 JCM 34134

NCBI tax ID(s) 1795827

Special Collections JCM

History JCM <-- LMG 30896 <-- B. Kathy; Natl. Microbiol. Lab., Public Health Agency of Canada, Canada <-- Alberta Health Services., Canada; R719/02.

Links

Eikenella longinqua JCM 34134 is a bacterium that was isolated from Blood culture of a patient in Edmonton.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 411050

LMG 30896,NCTC 14179,JCM 34134,CCUG 76607

@ref 20215

Last LPSN update 2026-05-29 08:45:29

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Neisseriaceae

Genus Eikenella

Species Eikenella longinqua

Full scientific name Eikenella longinqua Bernard et al. 2020

Morphology

Cell morphology

@ref	Confidence	Gram stain
125439	98.532
125439	96.648	positive
125438	98.478	negative

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.517

Spore formation

@ref	Spore formation	Confidence
125438		90.957

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67770	Blood culture of a patient in Edmonton	Homo sapiens	Alberta	Canada	CAN	North America

Taxonmaps

69479

Global distribution of 16S sequence KU663110 (>99% sequence identity) for Neisseria from Microbeatlas

Aquatic Samples	23
Soil Samples	112
Animal Samples	1020
Plant Samples	2
Total Samples	1157

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM164835v1 assembly for Eikenella longinqua NML02-A-017	contig	GCA_001648355	1795827.3	2744054920	1795827	70.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Eikenella longinqua strain NML02-A-017 16S ribosomal RNA gene, partial sequence	KU663110	1480		1795827

GC content

@ref	GC-content (mol%)	Method
67770	58.8	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM164835v1 assembly for Eikenella longinqua NML02-A-017
NCBI: GCA_001648355

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.52	no
125439	motility	BacteriaNetⓘ	no	98.53	no
125439	gram_stain	BacteriaNetⓘ	positive	96.65	no
125439	spore_formation	BacteriaNetⓘ	yes	35.63	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Eikenella longinqua NML02-A-017
NCBI: GCA_001648355.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.48	no
125438	anaerobic	anaerobicⓘ	no	92.35	no
125438	aerobic	aerobicⓘ	yes	50.55	no
125438	spore-forming	spore-formingⓘ	no	90.96	no
125438	thermophilic	thermophileⓘ	no	97.33	yes
125438	flagellated	motile2+ⓘ	no	83.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Gastrointestinal symptoms of long COVID-19 related to the ectopic colonization of specific bacteria that move between the upper and lower alimentary tract and alterations in serum metabolites.	Zhang D, Weng S, Xia C, Ren Y, Liu Z, Xu Y, Yang X, Wu R, Peng L, Sun L, Zhu J, Liang X, Jia Y, Wang H, Chen Q, Liu D, Chen Y, Guo H, Han X, Jin Z, Chen C, Yang X, Li Z, Huang H.	BMC Med	10.1186/s12916-023-02972-x	2023
	Update on Accepted Novel Bacterial Isolates Derived from Human Clinical Specimens and Taxonomic Revisions Published in 2020 and 2021.	Munson E, Carroll KC.	J Clin Microbiol	10.1128/jcm.00282-22	2023
	Notification List of Bacterial Strains Made Available by the United Kingdom National Collection of Type Cultures in 2021.	Turnbull JD, Dicks J, Gurung S, McGregor H, NCTC 2021 Depositors Cohort, Alexander S.	Microbiol Resour Announc	10.1128/mra.00357-22	2022
Phylogeny	Eikenella glucosivorans sp. nov., isolated from a human throat swab, and emendation of the genus Eikenella to include saccharolytic species.	Hering S, Jansson MK, Buhl MEJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004977	2021
Phylogeny	Description of Eikenella halliae sp. nov. and Eikenella longinqua sp. nov., derived from human clinical materials, emendation of Eikenella exigua Stormo et al. 2019 and emendation of the genus Eikenella to include species which are strict anaerobes.	Bernard KA, Burdz T, Wiebe D, Bernier AM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004150	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Eikenella longinqua (NML 02-A-017, NCTC 14179, LMG 30896)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001648355

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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