Alteromonas profundi (MCCC 1K04570, JCM 33893)

Name: Alteromonas profundi (MCCC 1K04570, JCM 33893)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164688

Type strain

Culture col. no. MCCC 1K04570 JCM 33893

NCBI tax ID(s) 2696062

Special Collections JCM

Links

Alteromonas profundi JCM 33893 is a mesophilic prokaryote that was isolated from Deep seawater from the Indian Ocean at a depth of 5,003 m.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133435

JCM 33893

@ref 20215

Last LPSN update 2025-12-16 10:09:31

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Alteromonas

Species Alteromonas profundi

Full scientific name Alteromonas profundi Shen et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	95.6
125438	negative	99.969

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.8

Spore formation

@ref	Spore formation	Confidence
125439		95.5
125438		90.519

Observation

67770

Observationquinones: Q-8

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Latitude	Longitude
67770	Deep seawater from the Indian Ocean (80.4°E, 15.7°S) at a depth of 5,003 m	Indian Ocean	-15.7	80.4 -15.7/80.4

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
67770	ASM1050086v1 assembly for Alteromonas profundi 345S023	scaffold	GCA_010500865	2696062.3	2696062	54.91

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Alteromonas profundi strain 345S023 16S ribosomal RNA gene, partial sequence	MN940442	1455		2696062

GC content

@ref	GC-content (mol%)	Method
67770	44.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alteromonas profundi 345S023
NCBI: GCA_010500865

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.50	no
125439	motility	BacteriaNetⓘ	yes	56.90	no
125439	gram_stain	BacteriaNetⓘ	negative	95.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alteromonas profundi 345S023
NCBI: GCA_010500865.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.97	no
125438	anaerobic	anaerobicⓘ	no	96.60	no
125438	aerobic	aerobicⓘ	yes	75.61	no
125438	spore-forming	spore-formingⓘ	no	90.52	no
125438	thermophilic	thermophileⓘ	no	96.98	yes
125438	flagellated	motile2+ⓘ	yes	86.41	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alteromonas profundi sp. nov., isolated from the Indian Ocean.	Shen X, Zhu S, Dong B, Chen Y, Xue Z, Ren N, Chen T, Chen X, Yang J, Chen J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004308	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alteromonas profundi (MCCC 1K04570, JCM 33893)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_010500865

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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