Name: Alteromonas profundi JCM 33893
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164688

Type strain:

Species: Alteromonas profundi

Culture col. no.: JCM 33893, MCCC 1K04570

Strain history: J. Chen; Zhejiang Wanli Univ., China; 345S023.

NCBI tax ID(s): 2696062 (species)

Section

Alteromonas profundi JCM 33893 is a mesophilic, Gram-negative bacterium that was isolated from Deep seawater from the Indian Ocean at a depth of 5,003 m.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Alteromonas*
	Species	**Alteromonas profundi**
	Full Scientific Name (LPSN)	Alteromonas profundi Shen et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #69480]	Motility	yes Confidence in %98.528

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.979
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Deep seawater from the Indian Ocean (80.4°E, 15.7°S) at a depth of 5,003 m
[Ref.: #67770]	Country	Indian Ocean
[Ref.: #67770]	Geographic location	-15.7000°/80.4000°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alteromonas sp. strain 345S023 16S ribosomal RNA gene, partial sequence	MN940442	1455	ENA	2696062 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alteromonas profundi 345S023	GCA_010500865	scaffold	GenBank	2696062 tax ID

[Ref.: #67770]

GC-content

44.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alteromonas profundi 345S023 NCBI: GCA_010500865.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alteromonas profundi 345S023 NCBI: GCA_010500865.1
[Ref.: #69480]	motile	yes	89.462	no
[Ref.: #69480]	flagellated	yes	85.12	no
[Ref.: #69480]	gram-positive	no	99.223	no
[Ref.: #69480]	anaerobic	no	98.642	no
[Ref.: #69480]	aerobic	yes	87.394	no
[Ref.: #69480]	halophile	yes	82.959	no
[Ref.: #69480]	spore-forming	no	97.245	no
[Ref.: #69480]	glucose-util	yes	90.721	no
[Ref.: #69480]	thermophile	no	99.244	yes
[Ref.: #69480]	glucose-ferment	no	85.314	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33893, MCCC 1K04570

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alteromonas profundi sp. nov., isolated from the Indian Ocean.	Shen X, Zhu S, Dong B, Chen Y, Xue Z, Ren N, Chen T, Chen X, Yang J, Chen J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004308	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Alteromonas profundi 345S023

Alteromonas profundi 345S023

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