Sphingomonas suaedae (CGMCC 1.17078, JCM 33850)

Name: Sphingomonas suaedae (CGMCC 1.17078, JCM 33850)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164681

Type strain

Culture col. no. CGMCC 1.17078 JCM 33850

NCBI tax ID(s) 2599297

Special Collections JCM

History JCM <-- J.-Q. Sun; Coll. of Ecol. & Environ., Inner Mongolia Univ., China; XS-10.

Links

Sphingomonas suaedae JCM 33850 is a bacterium that was isolated from Saline soil from rhizosphere of Suaeda salsa at Tumd Right Banner.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27471

JCM 33850

@ref 20215

Last LPSN update 2026-05-29 08:45:28

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Species Sphingomonas suaedae

Full scientific name Sphingomonas suaedae Zhang et al. 2020

Synonyms (1)

Alteristakelama suaedae

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	91.101

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.523

Spore formation

@ref	Spore formation	Confidence
125439		94.447

Observation

67770

Observationquinones: Q-10

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67770	Saline soil from rhizosphere of Suaeda salsa at Tumd Right Banner	Suaeda salsa	Inner Mongolia	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM783321v1 assembly for Sphingomonas suaedae XS-10	complete	GCA_007833215	2599297.3	2888434023	2599297	98.54

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Sphingomonas suaedae strain XS-10 16S ribosomal RNA gene, partial sequence	MK788322	1444		28214

GC content

@ref	GC-content (mol%)	Method
67770	65.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM783321v1 assembly for Sphingomonas suaedae XS-10
NCBI: GCA_007833215

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.52	no
125439	gram_stain	BacteriaNetⓘ	negative	91.10	no
125439	spore_formation	BacteriaNetⓘ	no	94.45	no
125439	motility	BacteriaNetⓘ	yes	55.58	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas suaedae sp. nov., a chitin-degrading strain isolated from rhizosphere soil of Suaeda salsa.	Zhang H, Xu L, Zhang JX, Sun JQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004238	2020
Phylogeny	Sphingomonas liriopis sp. nov., Sphingomonas donggukensis sp. nov., and Sphingomonas tagetis sp. nov., isolated from Liriope platyphylla fruit, soil, and Tagetes patula roots.	Kim I, Chhetri G, So Y, Jung Y, Park S, Seo T	Arch Microbiol	10.1007/s00203-022-03360-4	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Sphingomonas suaedae (CGMCC 1.17078, JCM 33850)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_007833215

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media