Name: Agrilactobacillus yilanensis 54-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164664

Type strain:

Species: Agrilactobacillus yilanensis

Strain Designation: 54-2

Culture col. no.: JCM 33824, CCM 8896, KCTC 21120, LMG 31058, NCIMB 15154

Strain history: LMG 31058 <-- C. T. Gu; Coll. of Life Sci., Northeast Agric. Univ., China; 54-2.

NCBI tax ID(s): 2485997 (species)

Section

Agrilactobacillus yilanensis 54-2 is a facultative anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from Traditional pickle in Heilongjiang Province.

colony-forming
Gram-positive
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Agrilactobacillus*
	Species	**Agrilactobacillus yilanensis**
	Full Scientific Name (LPSN)	Agrilactobacillus yilanensis (Wei and Gu 2019) Zheng et al. 2020

Synonym

Lactobacillus yilanensis

Information on morphological and physiological properties Morphology

[Ref.: #68191]	Gram stain	positive

[Ref.: #68191]	Cell length	2.5-4 µm

[Ref.: #68191]	Cell width	1 µm

[Ref.: #68191]	Cell shape	rod-shaped

[Ref.: #68191]	Motility	no

[Ref.: #68191]	Colony size	1.5 mm
[Ref.: #68191]	Colony color	greyish-white
[Ref.: #68191]	Colony shape	circular
[Ref.: #68191]	Incubation period	3 days
[Ref.: #68191]	Cultivation medium used	mMRS

Information on culture and growth conditions Culture and growth conditions

	Kind of temperature		Temperature
[Ref.: #67770]		growth	30 °C
[Ref.: #68191]		growth	15-37 °C
[Ref.: #68191]	no	growth	45 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68191]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #68191]			growth	5
[Ref.: #68191]		no	growth	11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68191]

Oxygen tolerance

facultative anaerobe

[Ref.: #68191]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68191]		NaCl		growth	5	%(w/v)
[Ref.: #68191]		NaCl	no	growth	6	%(w/v)

[Ref.: #68191]

Observation

usually occur singly

[Ref.: #68191]

Name of tolerated compound

tellurite

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68191]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #68191]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #68191]	amygdalin ChEBI	-	builds acid from
[Ref.: #68191]	arbutin ChEBI	-	builds acid from
[Ref.: #68191]	arginine ChEBI	-	assimilation
[Ref.: #68191]	cellobiose ChEBI	-	builds acid from
[Ref.: #68191]	D-arabinose ChEBI	+	builds acid from
[Ref.: #68191]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68191]	D-fructose ChEBI	+	builds acid from
[Ref.: #68191]	D-fucose ChEBI	-	builds acid from
[Ref.: #68191]	D-galactose ChEBI	+	builds acid from
[Ref.: #68191]	D-glucose ChEBI	+	builds acid from
[Ref.: #68191]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68191]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68191]	D-mannose ChEBI	+	builds acid from
[Ref.: #68191]	D-ribose ChEBI	+	builds acid from
[Ref.: #68191]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68191]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68191]	D-xylose ChEBI	-	builds acid from
[Ref.: #68191]	erythritol ChEBI	-	builds acid from
[Ref.: #68191]	esculin ChEBI	-	hydrolysis
[Ref.: #68191]	galactitol ChEBI	-	builds acid from
[Ref.: #68191]	gentiobiose ChEBI	-	builds acid from
[Ref.: #68191]	gluconate ChEBI	+	builds acid from
[Ref.: #68191]	glucose ChEBI	-	builds gas from
[Ref.: #68191]	glycerol ChEBI	-	builds acid from
[Ref.: #68191]	glycogen ChEBI	-	builds acid from
[Ref.: #68191]	hippurate ChEBI	-	hydrolysis
[Ref.: #68191]	inulin ChEBI	-	builds acid from
[Ref.: #68191]	L-arabinose ChEBI	+	builds acid from
[Ref.: #68191]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68191]	L-fucose ChEBI	+	builds acid from
[Ref.: #68191]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #68191]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68191]	L-xylose ChEBI	-	builds acid from
[Ref.: #68191]	lactose ChEBI	-	builds acid from
[Ref.: #68191]	maltose ChEBI	+	builds acid from
[Ref.: #68191]	melezitose ChEBI	-	builds acid from
[Ref.: #68191]	melibiose ChEBI	-	builds acid from
[Ref.: #68191]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #68191]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #68191]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #68191]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68191]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #68191]	nitrate ChEBI	-	reduction
[Ref.: #68191]	nitrite ChEBI	-	reduction
[Ref.: #68191]	pyruvate ChEBI	-	assimilation
[Ref.: #68191]	raffinose ChEBI	-	builds acid from
[Ref.: #68191]	ribitol ChEBI	-	builds acid from
[Ref.: #68191]	salicin ChEBI	-	builds acid from
[Ref.: #68191]	starch ChEBI	-	builds acid from
[Ref.: #68191]	sucrose ChEBI	-	builds acid from
[Ref.: #68191]	trehalose ChEBI	+	builds acid from
[Ref.: #68191]	turanose ChEBI	-	builds acid from
[Ref.: #68191]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68191]	acetoin ChEBI	no
[Ref.: #68191]	D-lactate	yes
[Ref.: #68191]	hydrogen sulfide ChEBI	yes
[Ref.: #68191]	indole ChEBI	no
[Ref.: #68191]	L-lactate	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68191]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68191]	catalase	-	1.11.1.6
[Ref.: #68191]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #68191]	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68191]

Fatty acid	Percentage
C18:1 w9c	41.4
C16:0	30
C14:0	8.2
C15:0 iso	7.1
C18:1 w6c/C18:1 w7c	4.2
C16:1 w6c/C16:1 w7c	3.2
C19:1 w6c / C19:0 cyclo w10c	1.2
C12:0	1
C18:0	0.9
C15:0 anteiso	0.8
C18:2 w6,9c / C18:0 anteiso	0.7
C19:1 iso I	0.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Traditional pickle in Heilongjiang Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #68191]	Sample type/isolated from	traditional pickle
[Ref.: #68191]	Geographic location (country and/or sea, region)	Tibet Autonomous Region
[Ref.: #68191]	Country	China
[Ref.: #68191]	Country ISO 3 Code	CHN
[Ref.: #68191]	Continent	Asia
[Ref.: #68191]	Enrichment culture	mMRS agar
[Ref.: #68191]	Enrichment culture duration	3 days
[Ref.: #68191]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68191]	Lactobacillus sp. strain 54-2 16S ribosomal RNA gene, partial sequence	MK110806	1437	ENA	2485997 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Agrilactobacillus yilanensis 54-2	GCA_003946725	contig	GenBank	2485997 tax ID
[Ref.: #66792]	Agrilactobacillus yilanensis 54-2	2885664702	draft	JGI IMG/M	2485997 tax ID	*

[Ref.: #68191]	GC-content	40 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	40 mol%
[Ref.: #67770]	GC-content	41.7 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33824, CCM 8896, KCTC 21120, LMG 31058, NCIMB 15154

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus yilanensis sp. nov., Lactobacillus bayanensis sp. nov., Lactobacillus keshanensis sp. nov., Lactobacillus kedongensis sp. nov., Lactobacillus baiquanensis sp. nov., Lactobacillus jidongensis sp. nov., Lactobacillus hulinensis sp. nov., Lactobacillus mishanensis sp. nov. and Lactobacillus zhongbaensis sp. nov., isolated from Chinese traditional pickle and yogurt.	Wei YX, Gu CT	Int J Syst Evol Microbiol	10.1099/ijsem.0.003609	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68191

Yu Xin Wei and Chun Tao Gu: Lactobacillus yilanensis sp. nov., Lactobacillus bayanensis sp. nov., Lactobacillus keshanensis sp. nov., Lactobacillus kedongensis sp. nov., Lactobacillus baiquanensis sp. nov., Lactobacillus jidongensis sp. nov., Lactobacillus hulinensis sp. nov., Lactobacillus mishanensis sp. nov. and Lactobacillus zhongbaensis sp. nov., isolated from Chinese traditional pickle and yogurt. IJSEM 69: 3178 - 3190 2019 ( DOI 10.1099/ijsem.0.003609 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Agrilactobacillus yilanensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF