Streptomyces fagopyri (CICC 24808, JCM 33796)

Name: Streptomyces fagopyri (CICC 24808, JCM 33796)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164655

Type strain

Culture col. no. CICC 24808 JCM 33796

NCBI tax ID(s) 2662397

Special Collections JCM

History JCM <-- Y. Guo; Hunan Univ. of Sci. & Technol., China: QMT-28.

Links

Streptomyces fagopyri JCM 33796 is a bacterium that was isolated from Rhizosphere soil of Fagopyrum dibotrys from Shuangfeng.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133484

JCM 33796

@ref 20215

Last LPSN update 2026-05-29 08:45:28

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces fagopyri

Full scientific name Streptomyces fagopyri Guo et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	98.729
125439		93.848

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.965

Spore formation

@ref	Spore formation	Confidence
125439		98.675

Observation

67770

Observationquinones: MK-9, MK-9(H₂), MK-9(H₄), MK-9(H₆) and MK-9(H₈)

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67770	Rhizosphere soil of Fagopyrum dibotrys from Shuangfeng	Fagopyrum dibotrys	Hunan Province	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM949827v1 assembly for Streptomyces fagopyri QMT-28	complete	GCA_009498275	2662397.3	2908914693	2662397	97.33

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Streptomyces fagopyri strain QMT-28 16S ribosomal RNA gene, partial sequence	MN044908	1389		2662397

GC content

@ref	GC-content (mol%)	Method
67770	71.2	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM949827v1 assembly for Streptomyces fagopyri QMT-28
NCBI: GCA_009498275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.97	no
125439	gram_stain	BacteriaNetⓘ	positive	98.73	no
125439	spore_formation	BacteriaNetⓘ	yes	98.68	no
125439	motility	BacteriaNetⓘ	no	93.85	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Steptomyces fagopyri sp. nov., a novel actinomycete isolated from rhizospheric soil of Fagopyrum dibotrys.	Guo Y, Tang X, Hu S, Li K, Zhou M, Jian G	Int J Syst Evol Microbiol	10.1099/ijsem.0.004555	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces fagopyri (CICC 24808, JCM 33796)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009498275

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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