Halalkalirubrum salinum (CGMCC 1.16693, JCM 33785)

Name: Halalkalirubrum salinum (CGMCC 1.16693, JCM 33785)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164649

Type strain

Culture col. no. CGMCC 1.16693 JCM 33785

NCBI tax ID(s) 2563889

Special Collections JCM

History JCM <-- Z. Zuo; IMCAS, China; N1521.

Links

Halalkalirubrum salinum JCM 33785 is an archaeon that was isolated from Saline lake in Tibet.

genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 132413

JCM 33785

@ref 20215

Last LPSN update 2026-05-29 08:45:28

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Halalkalirubrum

Species Halalkalirubrum salinum

Full scientific name Halalkalirubrum salinum Zuo et al. 2022

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	92.981

Spore formation

@ref	Spore formation	Confidence
125439		92.887

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Saline lake in Tibet	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence MK228974 (>99% sequence identity) for Haloferacaceae from Microbeatlas

Aquatic Samples	135
Soil Samples	38
Animal Samples	3
Plant Samples	0
Total Samples	176

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM554329v1 assembly for Halalkalirubrum salinum N1521	scaffold	GCA_005543295	2563889.3	2993728853	2563889	63.63

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Halalkalirubrum salinum strain N1521 16S ribosomal RNA gene, partial sequence	MK228974	1475		2563889

GC content

@ref	GC-content (mol%)	Method
67770	58.37	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM554329v1 assembly for Halalkalirubrum salinum N1521
NCBI: GCA_005543295

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.98	no
125439	gram_stain	BacteriaNetⓘ	negative	45.57	no
125439	spore_formation	BacteriaNetⓘ	no	92.89	no
125439	motility	BacteriaNetⓘ	no	60.53	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halalkalirubrum salinum N1521
NCBI: GCA_005543295.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	79.32	no
125438	anaerobic	anaerobicⓘ	no	89.89	no
125438	aerobic	aerobicⓘ	yes	75.61	no
125438	spore-forming	spore-formingⓘ	no	86.78	no
125438	thermophilic	thermophileⓘ	no	85.14	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halalkalirubrum salinum gen. nov., sp. nov., a halophilic archaeon isolated from a saline lake.	Zuo Z, Zhao D, Zhou J, Han J, Xiang H	Antonie Van Leeuwenhoek	10.1007/s10482-020-01502-6	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halalkalirubrum salinum (CGMCC 1.16693, JCM 33785)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_005543295

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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