Name: Phytoactinopolyspora mesophila JCM 33740
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164640

Type strain:

Species: Phytoactinopolyspora mesophila

Culture col. no.: JCM 33740, CGMCC 4.7654

Strain history: X.-J. Li; Coll. of Lab. Med., Hebei North Univ., China; XMNu-373.

NCBI tax ID(s): 2650750 (species)

Section

Phytoactinopolyspora mesophila JCM 33740 is a mesophilic, Gram-positive bacterium that was isolated from Saline-alkaline soil from the Mongolia Plateau of Dongwu County.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Jiangellales*
	Family	*Jiangellaceae*
	Genus	*Phytoactinopolyspora*
	Species	**Phytoactinopolyspora mesophila**
	Full Scientific Name (LPSN)	Phytoactinopolyspora mesophila Feng et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.825

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Saline-alkaline soil from the Mongolia Plateau of Dongwu County
[Ref.: #67770]	Geographic location (country and/or sea, region)	Inner Mongolia Autonomous Region
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MN209902 (>99% sequence identity) for Phytoactinopolyspora mesophila subclade from Microbeatlas

Aquatic Samples	14
Soil Samples	60
Animal Samples	60
Plant Samples	9
Total Samples	143

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Phytoactinopolyspora sp. strain XMNu-373 16S ribosomal RNA gene, partial sequence	MN209902	1484	ENA	1940290 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Phytoactinopolyspora mesophila XMNu-373	GCA_010122465	scaffold	GenBank	2650750 tax ID

[Ref.: #67770]

GC-content

66.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Phytoactinopolyspora mesophila XMNu-373 NCBI: GCA_010122465.1
[Ref.: #69481]	spore-forming	yes	54	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Phytoactinopolyspora mesophila XMNu-373 NCBI: GCA_010122465.1
[Ref.: #69480]	motile	no	89.564	no
[Ref.: #69480]	flagellated	no	98.521	no
[Ref.: #69480]	gram-positive	yes	90.973	no
[Ref.: #69480]	anaerobic	no	98.307	no
[Ref.: #69480]	aerobic	yes	89.644	no
[Ref.: #69480]	halophile	no	55.35	no
[Ref.: #69480]	spore-forming	yes	61.803	no
[Ref.: #69480]	glucose-util	yes	86.869	no
[Ref.: #69480]	thermophile	no	94.213	yes
[Ref.: #69480]	glucose-ferment	no	87.721	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33740, CGMCC 4.7654

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phytoactinopolyspora mesophila sp. nov., isolated from a saline-alkaline soil.	Feng XM, Zhai XH, Liu SW, Wang CM, Sun CH, Zhou X, Zhang YJ, Li XJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004274	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Phytoactinopolyspora mesophila XMNu-373

Phytoactinopolyspora mesophila XMNu-373

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