Name: Arthrobacter crusticola SLN-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164638

Type strain:

Species: Arthrobacter crusticola

Strain Designation: SLN-3

Culture col. no.: JCM 33723, ACCC 61595

Strain history: L. Liu; Chin. Acad. of For., China; SLN-3.

NCBI tax ID(s): 2547960 (species)

Section

Arthrobacter crusticola SLN-3 is an obligate aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from Biological soil crusts in Mu Us Sandy Land.

colony-forming
Gram-positive
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Arthrobacter*
	Species	"Arthrobacter crusticola"
	Full Scientific Name (LPSN)	Arthrobacter crusticola Liu et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #68302]	Gram stain	positive

[Ref.: #68302]	Cell length	0.7-1.2 µm

[Ref.: #68302]	Cell width	0.5-0.7 µm

[Ref.: #68302]	Cell shape	rod-shaped

[Ref.: #68302]	Motility	no

[Ref.: #68302]	Colony size	1-2 mm
[Ref.: #68302]	Colony color	pink or red
[Ref.: #68302]	Colony shape	circular
[Ref.: #68302]	Incubation period	3 days
[Ref.: #68302]	Cultivation medium used	Trypticase Soy Agar (TSA)

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	28 °C
[Ref.: #68302]	growth	10-37 °C
[Ref.: #68302]	optimum	25-30 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68302]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68302]			optimum	7-8
[Ref.: #68302]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68302]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68302]		NaCl		growth	0-4	%(w/v)
[Ref.: #68302]		NaCl		optimum	0	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68302]	2,3-butanediol	+	carbon source
[Ref.: #68302]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #68302]	alpha-lactose ChEBI	+	carbon source
[Ref.: #68302]	casein	-	hydrolysis
[Ref.: #68302]	cis-aconitate ChEBI	+	carbon source
[Ref.: #68302]	citrate ChEBI	+	assimilation
[Ref.: #68302]	citrate ChEBI	+	carbon source
[Ref.: #68302]	D-alanine ChEBI	+	carbon source
[Ref.: #68302]	D-galactonic acid lactone ChEBI	+	carbon source
[Ref.: #68302]	D-gluconate ChEBI	+	carbon source
[Ref.: #68302]	D-glucose ChEBI	+	assimilation
[Ref.: #68302]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #68302]	D-mannitol ChEBI	+	assimilation
[Ref.: #68302]	D-mannitol ChEBI	+	carbon source
[Ref.: #68302]	D-mannose ChEBI	+	assimilation
[Ref.: #68302]	D-psicose ChEBI	+	carbon source
[Ref.: #68302]	D-sorbitol ChEBI	+	carbon source
[Ref.: #68302]	D-trehalose ChEBI	+	carbon source
[Ref.: #68302]	DL-carnitine ChEBI	+	carbon source
[Ref.: #68302]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #68302]	glucose 1-phosphate ChEBI	+	carbon source
[Ref.: #68302]	glycerol 1-phosphate ChEBI	+	carbon source
[Ref.: #68302]	L-alanine ChEBI	+	carbon source
[Ref.: #68302]	L-arabinose ChEBI	+	assimilation
[Ref.: #68302]	L-arabinose ChEBI	+	carbon source
[Ref.: #68302]	L-pyroglutamic acid ChEBI	+	carbon source
[Ref.: #68302]	L-threonine ChEBI	+	carbon source
[Ref.: #68302]	malate ChEBI	+	assimilation
[Ref.: #68302]	melibiose ChEBI	+	carbon source
[Ref.: #68302]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #68302]	n-acetyl-D-galactosamine ChEBI	+	carbon source
[Ref.: #68302]	nitrate ChEBI	-	reduction
[Ref.: #68302]	potassium gluconate ChEBI	+	assimilation
[Ref.: #68302]	putrescine ChEBI	+	carbon source
[Ref.: #68302]	raffinose ChEBI	+	carbon source
[Ref.: #68302]	serine ChEBI	+	carbon source
[Ref.: #68302]	starch ChEBI	-	hydrolysis
[Ref.: #68302]	succinamate ChEBI	+	carbon source
[Ref.: #68302]	sucrose ChEBI	+	carbon source
[Ref.: #68302]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68302]	acetoin ChEBI	no
[Ref.: #68302]	hydrogen sulfide ChEBI	no
[Ref.: #68302]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68302]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68302]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68302]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68302]	beta-galactosidase	+	3.2.1.23
[Ref.: #68302]	beta-glucosidase	+	3.2.1.21
[Ref.: #68302]	catalase	+	1.11.1.6
[Ref.: #68302]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68302]	gelatinase	+
[Ref.: #68302]	leucine arylamidase	+	3.4.11.1
[Ref.: #68302]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68302]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68302]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68302]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68302]

Fatty acid	Percentage
C15:0 anteiso	76.9
C17:0 anteiso	11.8
C15:0 iso	5.3
C16:0	2.3
C16:0 iso	2
C14:0 iso	0.4
C17:0 iso	0.3
C17:0 iso 3OH	0.3
C15:1 anteiso	0.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Biological soil crusts in Mu Us Sandy Land
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #68302]	Sample type/isolated from	biological soil crust
[Ref.: #68302]	Geographic location (country and/or sea, region)	Mu Us Sandy Land
[Ref.: #68302]	Country	China
[Ref.: #68302]	Country ISO 3 Code	CHN
[Ref.: #68302]	Continent	Asia
[Ref.: #68302]	Geographic location	38.4181°/108.7350°
[Ref.: #68302]	Enrichment culture	nutrient agar
[Ref.: #68302]	Enrichment culture duration	5-7 days
[Ref.: #68302]	Enrichment culture temperature	30 ̊C
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MK621196 (>99% sequence identity) for Arthrobacter from Microbeatlas

Aquatic Samples	5
Soil Samples	15
Animal Samples	3
Plant Samples	3
Total Samples	26

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68302]	Arthrobacter sp. strain SLN-3 16S ribosomal RNA gene, partial sequence	MK621196	1513	ENA	2547960 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68302]	Arthrobacter crusticola SLN-3	GCA_004357995	contig	GenBank	2547960 tax ID
[Ref.: #66792]	Arthrobacter crusticola SLN-3	2867555429	draft	JGI IMG/M	2547960 tax ID	*

[Ref.: #67770]

GC-content

68.1 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33723, ACCC 61595

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter crusticola sp. nov., Isolated from Biological Soil Crusts in the Mu Us Sandy Land, China.	Liu L, Liang L, He S, Xu L, Chi M, Shi S, Zhang X, Li L	Curr Microbiol	10.1007/s00284-020-02070-8	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68302

Lei Liu, Lixiong Liang, Shanwen He, Lijun Xu, Miao Chi, Shaowen Shi, XiaoXia Zhang & Lubin Li: Arthrobacter crusticola sp. nov., Isolated from Biological Soil Crusts in the Mu Us Sandy Land, China. Curr Microbiol 77: 2042 - 2048 2020 ( DOI 10.1007/s00284-020-02070-8 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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