Name: Sphingomonas profundi JCM 33666
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164627

Type strain:

Species: Sphingomonas profundi

Culture col. no.: JCM 33666, MCCC 1K04066

Strain history: Y. Zhang; Inst. of Oceanogr., Shanghai Jiao Tong Univ., China; LMO-1.

NCBI tax ID(s): 2681549 (species)

Section

Sphingomonas profundi JCM 33666 is a mesophilic bacterium that was isolated from Marine sediment from the Mariana Trench in the western Pacific Ocean at a water depth of 11,094m.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas profundi**
	Full Scientific Name (LPSN)	Sphingomonas profundi Yang et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Marine sediment from the Mariana Trench in the western Pacific Ocean (11° 19' 39.14" N, 142° 12' 6.87" W) at a water depth of 11,094m
[Ref.: #67770]	Country	Pacific Ocean
[Ref.: #67770]	Geographic location	11.3275°/-142.2020°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingomonas sp. strain LMO-1 16S ribosomal RNA gene, partial sequence	MN231302	1445	ENA	28214 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingomonas profundi LMO-1	GCA_009739515	complete	GenBank	2681549 tax ID

[Ref.: #67770]

GC-content

69.2 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33666, MCCC 1K04066

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas profundi sp. nov., isolated from deep-sea sediment of the Mariana Trench.	Yang S, Li X, Xiao X, Zhuang G, Zhang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004235	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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