Paraburkholderia flava (KACC 21387, JCM 33640)

Name: Paraburkholderia flava (KACC 21387, JCM 33640)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164617

Type strain

Culture col. no. KACC 21387 JCM 33640

NCBI tax ID(s) 2547393

Special Collections JCM

History JCM <-- J. Kim; Kyonggi Univ., South Korea; LD6.

Links

Paraburkholderia flava JCM 33640 is a bacterium that was isolated from Forest soil in Suwon.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 131958

JCM 33640

@ref 20215

Last LPSN update 2026-05-29 08:45:27

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Paraburkholderia

Species Paraburkholderia flava

Full scientific name Paraburkholderia flava Trinh and Kim 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.936

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.67
125438	aerobe	90.153

Spore formation

@ref	Spore formation	Confidence
125439		95.994

Observation

67770

Observationquinones: Q-8

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Forest soil in Suwon	Gyeonggi-do	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM435998v1 assembly for Paraburkholderia flava LD6	contig	GCA_004359985	2547393.3	2882815965	2547393	77.25

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Paraburkholderia flava strain LD6 16S ribosomal RNA gene, partial sequence	MH379802	1477		1926495

GC content

@ref	GC-content (mol%)	Method
67770	63.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM435998v1 assembly for Paraburkholderia flava LD6
NCBI: GCA_004359985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	74.14	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.67	no
125439	motility	BacteriaNetⓘ	yes	59.16	no
125439	spore_formation	BacteriaNetⓘ	no	95.99	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paraburkholderia flava LD6
NCBI: GCA_004359985.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.94	no
125438	anaerobic	anaerobicⓘ	no	96.81	no
125438	aerobic	aerobicⓘ	yes	90.15	no
125438	spore-forming	spore-formingⓘ	no	86.26	no
125438	thermophilic	thermophileⓘ	no	97.80	yes
125438	flagellated	motile2+ⓘ	yes	85.76	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paraburkholderia flava sp. nov., isolated from cool temperate forest soil.	Trinh NH, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004063	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paraburkholderia flava (KACC 21387, JCM 33640)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004359985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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