Name: Halomonas icarae JCM 33602
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164608

Type strain:

Species: Halomonas icarae

Culture col. no.: JCM 33602, KACC 21317, NAIMCC B-2254

Strain history: K. Pandiyan; NBAIM, India; D1-1.

NCBI tax ID(s): 2691040 (species)

Section

Halomonas icarae JCM 33602 is a mesophilic, Gram-negative bacterium that was isolated from Soil of Pentha beach.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas icarae**
	Full Scientific Name (LPSN)	Halomonas icarae Pandiyan et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.995

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil of Pentha beach
[Ref.: #67770]	Geographic location (country and/or sea, region)	Odisha
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halomonas icarae strain D1-1 16S ribosomal RNA gene, partial sequence	MK346303	1458	ENA	2691040 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halomonas icarae D1-1	GCA_009901955	scaffold	GenBank	2691040 tax ID

[Ref.: #67770]

GC-content

64 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomonas icarae D1-1 NCBI: GCA_009901955.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas icarae D1-1 NCBI: GCA_009901955.1
[Ref.: #69480]	motile	no	68.798	no
[Ref.: #69480]	flagellated	no	86.71	no
[Ref.: #69480]	gram-positive	no	98.907	no
[Ref.: #69480]	anaerobic	no	99.103	no
[Ref.: #69480]	aerobic	yes	87.24	no
[Ref.: #69480]	halophile	yes	95.774	no
[Ref.: #69480]	spore-forming	no	96.264	no
[Ref.: #69480]	glucose-util	yes	89.28	no
[Ref.: #69480]	thermophile	no	98.589	no
[Ref.: #69480]	glucose-ferment	no	79.475	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33602, KACC 21317, NAIMCC B-2254

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas icarae sp. nov., a moderately halophilic bacterium isolated from beach soil in India.	Pandiyan K, Kushwaha P, Bagul SY, Chakdar H, Madhaiyan M, Krishnamurthi S, Kumar P, Karthikeyan N, Singh A, Kumar M, Singh UB, Saxena AK	Int J Syst Evol Microbiol	10.1099/ijsem.0.004611	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Halomonas icarae D1-1

Halomonas icarae D1-1

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