Name: Antarcticibacterium arcticum JCM 33514
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164593

Type strain:

Species: Antarcticibacterium arcticum

Culture col. no.: JCM 33514, KCCM 43316

Strain history: Y. M. Lee; KOPRI, South Korea; PAMC 28998.

NCBI tax ID(s): 2585771 (species)

Section

Antarcticibacterium arcticum JCM 33514 is a mesophilic bacterium that was isolated from Sediment sample collected at an active submarine mud volcano of a depth of 282 m in the Beaufort Sea.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Antarcticibacterium*
	Species	**Antarcticibacterium arcticum**
	Full Scientific Name (LPSN)	Antarcticibacterium arcticum Lee et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sediment sample collected at an active submarine mud volcano of a depth of 282 m in the Beaufort Sea
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Antarcticibacterium sp. PAMC 28998 16S ribosomal RNA gene, partial sequence	MN100311	1489	ENA	2585771 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Antarcticibacterium arcticum PAMC 28998	GCA_007993795	complete	GenBank	2585771 tax ID
[Ref.: #66792]	Antarcticibacterium sp. PAMC 28998	2585771.3	complete	PATRIC	2585771 tax ID	*

[Ref.: #67770]

GC-content

39.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Antarcticibacterium sp. PAMC 28998 PATRIC: 2585771.3
[Ref.: #69480]	motile	no	90.74	no
[Ref.: #69480]	gram-positive	no	98.259	no
[Ref.: #69480]	anaerobic	no	98.767	no
[Ref.: #69480]	aerobic	yes	85.314	no
[Ref.: #69480]	halophile	yes	54.841	no
[Ref.: #69480]	spore-forming	no	94.017	no
[Ref.: #69480]	glucose-util	yes	86.801	no
[Ref.: #69480]	thermophile	no	99.143	yes
[Ref.: #69480]	flagellated	no	94.92	no
[Ref.: #69480]	glucose-ferment	no	89.673	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33514, KCCM 43316

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Antarcticibacterium arcticum sp. nov., a bacterium isolated from marine sediment of the Canadian Beaufort Sea.	Lee YM, Baek K, Lee DH, Park Y, Shin SC, Jin YK	Int J Syst Evol Microbiol	10.1099/ijsem.0.004122	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Antarcticibacterium sp. PAMC 28998

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