Name: Mesorhizobium terrae NIBRBAC000500504
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164554

Type strain:

Species: Mesorhizobium terrae

Strain Designation: NIBRBAC000500504

Culture col. no.: JCM 33432, KCTC 72278

Strain history: M. Hur; Natl. Inst. of Biol. Resour., South Korea; NIBRBAC000500504.

NCBI tax ID(s): 2725666 (species)

Section

Mesorhizobium terrae NIBRBAC000500504 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Soil in Jangsu in Jeollabuk-do.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Mesorhizobium*
	Species	**Mesorhizobium terrae**
	Full Scientific Name (LPSN)	Mesorhizobium terrae Jung et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #68103]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #68103]	Cell length	1.4 µm

[Ref.: #68103]	Cell width	0.6 µm

[Ref.: #68103]	Cell shape	rod-shaped

[Ref.: #68103]	Motility	yes

[Ref.: #68103]	Colony color	white
[Ref.: #68103]	Colony shape	circular
[Ref.: #68103]	Incubation period	2-3 days
[Ref.: #68103]	Cultivation medium used	Reasoner's 2A agar (R2A)

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	25 °C
[Ref.: #68103]	growth	18-42 °C
[Ref.: #68103]	optimum	25 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68103]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68103]			optimum	7
[Ref.: #68103]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68103]

Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68103]		NaCl		growth	0.0-2.0	%(w/v)
[Ref.: #68103]		NaCl		optimum	0	%(w/v)

[Ref.: #67770]	Observation	quinones: Q-10
[Ref.: #68103]	Observation	The major polar lipids are diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylethanolamine (PE), phosphatidylcholine (PC)
[Ref.: #68103]	Observation	The major isoprenoid quinone is Q10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68103]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #68103]	3-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #68103]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #68103]	adipate ChEBI	-	assimilation
[Ref.: #68103]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #68103]	D-glucose ChEBI	+	assimilation
[Ref.: #68103]	D-mannitol ChEBI	+	assimilation
[Ref.: #68103]	D-mannose ChEBI	-	assimilation
[Ref.: #68103]	D-ribose ChEBI	-	assimilation
[Ref.: #68103]	D-sorbitol ChEBI	+	assimilation
[Ref.: #68103]	decanoate ChEBI	-	assimilation
[Ref.: #68103]	dna ChEBI	-	hydrolysis
[Ref.: #68103]	glucose ChEBI	-	builds acid from
[Ref.: #68103]	glycogen ChEBI	-	assimilation
[Ref.: #68103]	itaconate ChEBI	-	assimilation
[Ref.: #68103]	L-alanine ChEBI	+	assimilation
[Ref.: #68103]	L-arabinose ChEBI	+	assimilation
[Ref.: #68103]	L-fucose ChEBI	+	assimilation
[Ref.: #68103]	L-histidine ChEBI	+	assimilation
[Ref.: #68103]	L-proline ChEBI	+	assimilation
[Ref.: #68103]	L-rhamnose ChEBI	-	assimilation
[Ref.: #68103]	L-serine ChEBI	-	assimilation
[Ref.: #68103]	lactate ChEBI	+	assimilation
[Ref.: #68103]	malate ChEBI	-	assimilation
[Ref.: #68103]	maltose ChEBI	-	assimilation
[Ref.: #68103]	melibiose ChEBI	-	assimilation
[Ref.: #68103]	myo-inositol ChEBI	-	assimilation
[Ref.: #68103]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #68103]	nitrate ChEBI	-	reduction
[Ref.: #68103]	phenylacetate ChEBI	-	assimilation
[Ref.: #68103]	potassium 2-dehydro-D-gluconate	-	assimilation
[Ref.: #68103]	potassium 5-dehydro-D-gluconate	-	assimilation
[Ref.: #68103]	potassium gluconate ChEBI	-	assimilation
[Ref.: #68103]	propionate ChEBI	-	assimilation
[Ref.: #68103]	salicin ChEBI	-	assimilation
[Ref.: #68103]	skimmed milk	-	hydrolysis
[Ref.: #68103]	sodium acetate ChEBI	-	assimilation
[Ref.: #68103]	sodium citrate ChEBI	-	assimilation
[Ref.: #68103]	sodium malonate ChEBI	-	assimilation
[Ref.: #68103]	starch ChEBI	-	hydrolysis
[Ref.: #68103]	suberate ChEBI	-	assimilation
[Ref.: #68103]	sucrose ChEBI	-	assimilation
[Ref.: #68103]	tween 60 ChEBI	-	hydrolysis
[Ref.: #68103]	valerate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68103]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68103]	acid phosphatase	+	3.1.3.2
[Ref.: #68103]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68103]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68103]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68103]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68103]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68103]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68103]	arginine dihydrolase	+	3.5.3.6
[Ref.: #68103]	beta-galactosidase	-	3.2.1.23
[Ref.: #68103]	beta-glucosidase	-	3.2.1.21
[Ref.: #68103]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68103]	cystine arylamidase	+	3.4.11.3
[Ref.: #68103]	esterase (C 4)	+
[Ref.: #68103]	esterase Lipase (C 8)	+
[Ref.: #68103]	leucine arylamidase	+	3.4.11.1
[Ref.: #68103]	lipase (C 14)	-
[Ref.: #68103]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68103]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #68103]	protease	-
[Ref.: #68103]	trypsin	+	3.4.21.4
[Ref.: #68103]	urease	+	3.5.1.5
[Ref.: #68103]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil in Jangsu in Jeollabuk-do
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #68103]	Sample type/isolated from	soil
[Ref.: #68103]	Geographic location (country and/or sea, region)	Jangsu in Jeollabuk-do
[Ref.: #68103]	Country	Republic of Korea
[Ref.: #68103]	Country ISO 3 Code	KOR
[Ref.: #68103]	Continent	Asia
[Ref.: #68103]	Geographic location	35.8030°/127.6530°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MK621282 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	1015
Soil Samples	923
Animal Samples	2552
Plant Samples	1225
Total Samples	5715

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68103]	Mesorhizobium sp. strain NIBRBAC000500504 16S ribosomal RNA gene, partial sequence	MK621282	1417	ENA	2725666 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mesorhizobium terrae NIBRBAC000500504	GCA_008727715	complete	GenBank	2725666 tax ID	*
[Ref.: #66792]	Mesorhizobium soli strain NIBRBAC000500504	1295366.5	complete	PATRIC	1295366 tax ID	*
[Ref.: #66792]	Mesorhizobium terrae NIBRBAC000500504	2888331157	complete	JGI IMG/M	2725666 tax ID	*

[Ref.: #68103]

GC-content

62.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mesorhizobium terrae NIBRBAC000500504 NCBI: GCA_008727715.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mesorhizobium terrae NIBRBAC000500504 NCBI: GCA_008727715.1
[Ref.: #69480]	motile	yes	87.937	yes
[Ref.: #69480]	flagellated	no	77.705	no
[Ref.: #69480]	gram-positive	no	97.901	no
[Ref.: #69480]	anaerobic	no	98.313	no
[Ref.: #69480]	aerobic	yes	93.021	yes
[Ref.: #69480]	halophile	no	93.541	no
[Ref.: #69480]	spore-forming	no	95.968	no
[Ref.: #69480]	thermophile	no	99.026	no
[Ref.: #69480]	glucose-util	yes	90.509	no
[Ref.: #69480]	glucose-ferment	no	89.431	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33432, KCTC 72278

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesorhizobium terrae sp. nov., a novel species isolated from soil in Jangsu, Korea.	Jung YJ, Kim HJ, Hur M	Antonie Van Leeuwenhoek	10.1007/s10482-020-01435-0	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68103

You-Jung Jung, Hyun-Joong Kim, Moonsuk Hur: Mesorhizobium terrae sp. nov., a novel species isolated from soil in Jangsu, Korea. Antonie Van Leeuwenhoek 113: 1279 - 1278 2020 ( DOI 10.1007/s10482-020-01435-0 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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