Name: Carideicomes alvinocaridis SCR17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164552

Type strain:

Species: Carideicomes alvinocaridis

Strain Designation: SCR17

Culture col. no.: JCM 33426, MCCC 1K03732

Strain history: M. Yu; Coll. of Mar. Life Sci., Ocean Univ. of China, China; SCR17.

NCBI tax ID(s): 2541728 (species)

Section

Carideicomes alvinocaridis SCR17 is an aerobe, mesophilic, oval-shaped bacterium that forms circular colonies and was isolated from Shrimp gill habitat in Tangyin hydrothermal field of Okinawa Trough.

colony-forming
oval-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Carideicomes*
	Species	**Carideicomes alvinocaridis**
	Full Scientific Name (LPSN)	Carideicomes alvinocaridis Wang et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69610]	Cell length	0.8-1.0 µm

[Ref.: #69610]	Cell width	0.5-0.6 µm

[Ref.: #69610]	Cell shape	oval-shaped

[Ref.: #69610]	Motility	no

[Ref.: #69610]	Colony color	white
[Ref.: #69610]	Colony shape	circular
[Ref.: #69610]	Incubation period	2 days
[Ref.: #69610]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69610]

Culture medium

Marine agar (MA)

[Ref.: #69610]

Culture medium growth

		Temperature
[Ref.: #67770]	growth	37 °C
[Ref.: #69610]	growth	16-40 °C
[Ref.: #69610]	optimum	37 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #69610]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #69610]			optimum	7
[Ref.: #69610]			growth	5.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69610]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69610]		NaCl		growth	0-14	%
[Ref.: #69610]		NaCl		optimum	9-10	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69610]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #69610]	acetic acid ChEBI	+	growth
[Ref.: #69610]	acetoacetate ChEBI	+	growth
[Ref.: #69610]	beta-hydroxybutyrate ChEBI	+	growth
[Ref.: #69610]	butyrate ChEBI	+	growth
[Ref.: #69610]	D-arabitol ChEBI	+	builds acid from
[Ref.: #69610]	D-fructose ChEBI	+	builds acid from
[Ref.: #69610]	D-fructose 6-phosphate ChEBI	+	growth
[Ref.: #69610]	D-glucose ChEBI	+	builds acid from
[Ref.: #69610]	D-mannose ChEBI	+	builds acid from
[Ref.: #69610]	glucuronamide ChEBI	+	growth
[Ref.: #69610]	glycerol ChEBI	+	builds acid from
[Ref.: #69610]	L-fucose ChEBI	+	builds acid from
[Ref.: #69610]	L-malate ChEBI	+	growth
[Ref.: #69610]	lincomycin ChEBI	+	growth
[Ref.: #69610]	maltose ChEBI	+	builds acid from
[Ref.: #69610]	sodium butyrate ChEBI	+	growth
[Ref.: #69610]	sodium lactate ChEBI	+	growth
[Ref.: #69610]	starch ChEBI	+	builds acid from
[Ref.: #69610]	starch ChEBI	+	hydrolysis
[Ref.: #69610]	trehalose ChEBI	+	builds acid from
[Ref.: #69610]	tween 20 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #69610]	alkaline phosphatase	+	3.1.3.1
[Ref.: #69610]	catalase	+	1.11.1.6
[Ref.: #69610]	cytochrome oxidase	+	1.9.3.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #69610]

Fatty acid	Percentage
C18:1 w6c / C18:1 w7c	56.5
C15:0 anteiso	17.2
C16:0	12.9
C19:0 cyclo w8c	10.1
C12:0 3OH	7.8
C16:0 iso	7.6
C15:0 iso	5.5
C16:1w7c and/or C16:1w6c	4.1
C17:0 anteiso	3.6
C10:0 3OH	2.2
C17:1 anteiso B/iso I	1.6
C14:0	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Shrimp gill habitat in Tangyin hydrothermal field of Okinawa Trough

[Ref.: #69610]	Sample type/isolated from	shrimp gill habitat in Tangyin hydrothermal field of Okinawa Trough.
[Ref.: #69610]	Geographic location (country and/or sea, region)	Okinawa Trough
[Ref.: #69610]	Country	China
[Ref.: #69610]	Country ISO 3 Code	CHN
[Ref.: #69610]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aquicoccus sp. strain SCR17 16S ribosomal RNA gene, partial sequence	MH997491	1423	ENA	2541728 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Carideicomes alvinocaridis SCR17	GCA_005473895	contig	GenBank	2541728 tax ID
[Ref.: #69610]	genome sequence	SRJI00000000		GenBank	2541728 tax ID

[Ref.: #67770]

GC-content

67.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Carideicomes alvinocaridis SCR17 NCBI: GCA_005473895.1
[Ref.: #69480]	motile	yes	53.619	no
[Ref.: #69480]	flagellated	no	88.678	no
[Ref.: #69480]	gram-positive	no	95.645	no
[Ref.: #69480]	anaerobic	no	98.146	no
[Ref.: #69480]	aerobic	yes	94.255	no
[Ref.: #69480]	halophile	yes	69.964	no
[Ref.: #69480]	spore-forming	no	95.774	no
[Ref.: #69480]	glucose-util	yes	86.159	no
[Ref.: #69480]	thermophile	no	99.326	yes
[Ref.: #69480]	glucose-ferment	no	90.655	no
[Ref.: #69480]	motile	yes	53.619	no
[Ref.: #69480]	flagellated	no	88.678	no
[Ref.: #69480]	gram-positive	no	95.645	no
[Ref.: #69480]	anaerobic	no	98.146	no
[Ref.: #69480]	aerobic	yes	94.255	no
[Ref.: #69480]	halophile	yes	69.964	no
[Ref.: #69480]	spore-forming	no	95.774	no
[Ref.: #69480]	glucose-util	yes	86.159	no
[Ref.: #69480]	thermophile	no	99.326	yes
[Ref.: #69480]	glucose-ferment	no	90.655	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33426, MCCC 1K03732

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Carideicomes alvinocaridis gen. nov., sp. nov., a marine bacterium isolated from shrimp gill in a hydrothermal field of Okinawa Trough.	Wang Y, Liu L, Yu M, Zhou S, Fu T, Sun W, Du R, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003971	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69610

Yiting Wang, Lijun Liu, Min Yu, Shun Zhou, Tianyu Fu, Wen Sun, Rui Du and Xiao-Hua Zhang: Carideicomes alvinocaridis gen. nov., sp. nov., a marine bacterium isolated from shrimp gill in a hydrothermal field of Okinawa Trough. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003971 )

* These data were automatically processed and therefore are not curated

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