Name: Pseudomonas yangonensis JCM 33396
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164546

Type strain:

Species: Pseudomonas yangonensis

Culture col. no.: JCM 33396, LMG 31602

Strain history: M. Tohya and T. Kirikae; Juntendo Univ. Sch. of Med., Japan <-- H. H. Tin; Natl. Health Lab., Myanmar; MY50.

NCBI tax ID(s): 2579922 (species)

Section

Pseudomonas yangonensis JCM 33396 is a mesophilic, Gram-negative bacterium that was isolated from Wound of a patient hospitalized in Yangon.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas yangonensis**
	Full Scientific Name (LPSN)	Pseudomonas yangonensis Tohya et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #69480]	Motility	yes Confidence in %98.619

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Wound of a patient hospitalized in Yangon
[Ref.: #67770]	Country	Myanmar
[Ref.: #67770]	Country ISO 3 Code	MMR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MK907288 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	1
Soil Samples	1
Animal Samples	4
Plant Samples
Total Samples	6

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas sp. strain MY50 16S ribosomal RNA gene, partial sequence	MK907288	1469	ENA	306 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas yangonensis MY50	GCA_009932725	contig	GenBank	2579922 tax ID
[Ref.: #66792]	Pseudomonas sp. MY50	2579922.3	wgs	PATRIC	2579922 tax ID	*

[Ref.: #67770]

GC-content

62.82 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas sp. MY50 PATRIC: 2579922.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas sp. MY50 PATRIC: 2579922.3
[Ref.: #69480]	motile	yes	88.8	no
[Ref.: #69480]	gram-positive	no	98.821	no
[Ref.: #69480]	anaerobic	no	97.193	no
[Ref.: #69480]	aerobic	yes	93.741	no
[Ref.: #69480]	halophile	no	81.409	no
[Ref.: #69480]	spore-forming	no	95.526	no
[Ref.: #69480]	glucose-util	yes	91.68	no
[Ref.: #69480]	flagellated	yes	86.175	no
[Ref.: #69480]	thermophile	no	99.708	yes
[Ref.: #69480]	glucose-ferment	no	90.565	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33396, LMG 31602

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas yangonensis sp. nov., isolated from wound samples of patients in a hospital in Myanmar.	Tohya M, Watanabe S, Teramoto K, Tada T, Kuwahara-Arai K, Mya S, Zin KN, Kirikae T, Tin HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004181	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Pseudomonas sp. MY50

Pseudomonas sp. MY50

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