Pseudomonas juntendi (DMS 109244, JCM 33395, DSM 109244)

Name: Pseudomonas juntendi (DMS 109244, JCM 33395, DSM 109244)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164545

Type strain

Strain Designation BML3

Culture col. no. DMS 109244 JCM 33395 DSM 109244 BML3

NCBI tax ID(s) 2666183

Special Collections DSMZ JCM Literature strains

History M. Tohya and T. Kirikae; Juntendo Univ. Sch. of Med., Japan; BML3. <- M. Tohya, Univ. Juntendo School of Medicine; BML3

Links

Pseudomonas juntendi BML3 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from Sputum of a patient in Japan in 2018.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403019

LMG 33152,JCM 33395,DSM 109244

@ref 20215

Last LPSN update 2026-02-09 11:39:53

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas juntendi

Full scientific name Pseudomonas juntendi Tohya et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
68201	negative	1-2 µm	0.5-0.8 µm	rod-shaped
125438	negative				99
125439	negative				99.6
125439					90

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period
68201	1-2 mm	creamy colour	circular	2 days

Pigmentation

@ref	Production	Name
68201		fluorescent pigment

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
68606	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
68606	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30
68201	positive	growth	4-40
68606	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
68201	aerobe
125438	aerobe	93.189

Spore formation

@ref	Spore formation	Confidence
68201
125439		99.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68201	NaCl	positive	growth	1-7 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68201	17521 ChEBI	(-)-quinic acid	+	assimilation
68201		1 % sodium lactate	+	growth
68201	64552 ChEBI	2-hydroxybutyrate	+	assimilation
68201	37054 ChEBI	3-hydroxybutyrate	+	assimilation
68201	16411 ChEBI	acetic acid	+	assimilation
68201	17128 ChEBI	adipate	-	growth
68201	17925 ChEBI	alpha-D-glucose	+	assimilation
68201	161680 ChEBI	aztreonam	+	growth
68201	16947 ChEBI	citrate	+	assimilation
68201	78697 ChEBI	D-fructose 6-phosphate	+	assimilation
68201	28847 ChEBI	D-fucose	+	assimilation
68201	12936 ChEBI	D-galactose	+	assimilation
68201	18024 ChEBI	D-galacturonic acid	+	assimilation
68201	8391 ChEBI	D-gluconate	+	assimilation
68201	15748 ChEBI	D-glucuronate	+	assimilation
68201	15588 ChEBI	D-malate	+	assimilation
68201	16024 ChEBI	D-mannose	+	assimilation
68201	33801 ChEBI	D-saccharate	+	assimilation
68201	16523 ChEBI	D-serine	+	assimilation
68201	16523 ChEBI	D-serine	+	growth
68201	15740 ChEBI	formate	+	assimilation
68201	71321 ChEBI	fusidate	+	growth
68201	35390 ChEBI	galactarate	+	assimilation
68201	16865 ChEBI	gamma-aminobutyric acid	+	assimilation
68201	17234 ChEBI	glucose	+	assimilation
68201	32323 ChEBI	glucuronamide	+	assimilation
68201	17754 ChEBI	glycerol	+	assimilation
68201	32735 ChEBI	guanidinium chloride	+	growth
68201	17120 ChEBI	hexanoate	+	assimilation
68201	17596 ChEBI	inosine	+	assimilation
68201	16977 ChEBI	L-alanine	+	assimilation
68201	30849 ChEBI	L-arabinose	+	assimilation
68201	16467 ChEBI	L-arginine	+	assimilation
68201	90350 ChEBI	L-arginine-2-naphthylamide	+	assimilation
68201	29991 ChEBI	L-aspartate	+	assimilation
68201	29985 ChEBI	L-glutamate	+	assimilation
68201	15971 ChEBI	L-histidine	+	assimilation
68201		L-lactate	+	assimilation
68201	15589 ChEBI	L-malate	+	assimilation
68201	18183 ChEBI	L-pyroglutamic acid	+	assimilation
68201	17115 ChEBI	L-serine	+	assimilation
68201	6472 ChEBI	lincomycin	+	growth
68201	48607 ChEBI	lithium chloride	+	growth
68201	50694 ChEBI	minocycline	+	growth
68201	100147 ChEBI	nalidixic acid	+	growth
68201	75273 ChEBI	niaproof	+	growth
68201	32032 ChEBI	potassium gluconate	+	assimilation
68201	75248 ChEBI	potassium tellurite	+	growth
68201	17272 ChEBI	propionate	+	assimilation
68201	29673 ChEBI	rifamycin sv	+	growth
68201	75229 ChEBI	sodium bromate	+	growth
68201	64103 ChEBI	sodium butyrate	+	growth
68201	53258 ChEBI	sodium citrate	+	assimilation
68201	75198 ChEBI	tetrazolium blue	+	growth
68201	75193 ChEBI	tetrazolium violet	+	growth
68201	45735 ChEBI	troleandomycin	+	growth
68201	28001 ChEBI	vancomycin	+	growth

Enzymes

@ref	Value	Activity	Ec
68201	acid phosphatase	+	3.1.3.2
68201	alkaline phosphatase	-	3.1.3.1
68201	catalase	+	1.11.1.6
68201	cytochrome oxidase	+	1.9.3.1
68201	esterase (C 4)	+
68201	esterase Lipase (C 8)	+
68201	leucine arylamidase	+	3.4.11.1
68201	naphthol-AS-BI-phosphohydrolase	+
68201	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

68201

Fatty acid	Percentage
C16:0	29
C16:1 w7c/C16:1 w6c	28.5
C18:1 w7c/C18:1 w6c	23.1
C12:0 3OH	4.4
C10:0 3OH	3.3
C12:0 2OH	2.6
C17:0 cyclo	2.6
C12:0	1.5

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Isolation date
67770	Sputum of a patient in Japan in 2018
68201	sputum sample of a patient		Japan	JPN	Asia			2018-01-01
68606	sputum sample	Tokyo (35° 42' 8'' N, 139° 45' 39'' E)	Japan	JPN	Asia	35.7022	139.761 35.7022/139.761

Taxonmaps

69479

Global distribution of 16S sequence MK680061 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	543
Soil Samples	368
Animal Samples	799
Plant Samples	423
Total Samples	2133

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
68201	ASM993237v1 assembly for Pseudomonas juntendi BML3	contig	GCA_009932375	2666183.3	8034925566	2666183

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
68201	Pseudomonas juntendi strain BML3 16S ribosomal RNA gene, partial sequence	MK680061	1540		2666183
68606	Pseudomonas juntendi strain BML3 16S ribosomal RNA gene, partial sequence	MK583463	1432		2666183

GC content

@ref	GC-content (mol%)	Method
68201	62.66	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas juntendi BML3
NCBI: GCA_009932375

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	yes	90.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas juntendi strain BML3
PATRIC: 2666183.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	yes
125438	anaerobic	anaerobicⓘ	no	99.38	yes
125438	spore-forming	spore-formingⓘ	no	86.77	no
125438	aerobic	aerobicⓘ	yes	93.19	yes
125438	thermophilic	thermophileⓘ	no	98.99	yes
125438	flagellated	motile2+ⓘ	yes	87.69	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas juntendi sp. nov., isolated from patients in Japan and Myanmar.	Tohya M, Watanabe S, Teramoto K, Shimojima M, Tada T, Kuwahara-Arai K, War MW, Mya S, Tin HH, Kirikae T	Int J Syst Evol Microbiol	10.1099/ijsem.0.003623	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68201	Mari Tohya, Shin Watanabe, Kanae Teramoto, Masahiro Shimojima, Tatsuya Tada, Kyoko Kuwahara-Arai, May Wint War, San Mya, Htay Htay Tin and Teruo Kirikae: Pseudomonas juntendi sp. nov., isolated from patients in Japan and Myanmar. IJSEM 69: 3377 - 3384 2019 ( DOI 10.1099/ijsem.0.003623 )
#68606	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109244
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas juntendi (DMS 109244, JCM 33395, DSM 109244)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009932375

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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