Lentibacillus cibarius (KACC 21232, JCM 33390)

Name: Lentibacillus cibarius (KACC 21232, JCM 33390)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164542

Type strain

Culture col. no. KACC 21232 JCM 33390

NCBI tax ID(s) 2583219

Special Collections JCM

History Y. J. Oh; World Inst. of Kimchi, South Korea; NKC220-2.

Links

Lentibacillus cibarius JCM 33390 is a mesophilic prokaryote that was isolated from Cabbage kimchi produced by Wooyoungchannel Co..

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133114

JCM 33390

@ref 20215

Last LPSN update 2026-02-09 11:39:52

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Lentibacillus

Species Lentibacillus cibarius

Full scientific name Lentibacillus cibarius Oh et al. 2021

BacDive ID	Other strains from **Lentibacillus cibarius** (1)	Type strain
164543	L. cibarius JCM 33391

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	91.6

Spore formation

@ref	Spore formation	Confidence
125439		92.1

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Cabbage kimchi produced by Wooyoungchannel Co.	Ltd. in Hongcheon-gun, Gangwon-do	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM588755v1 assembly for Lentibacillus cibarius NKC220-2	contig	GCA_005887555	2583219.3	2890964402	2583219	73.09

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Lentibacillus cibarius strain NKC220-2 16S ribosomal RNA gene, partial sequence	MT130400	1488		2583219

GC content

@ref	GC-content (mol%)	Method
67770	41.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lentibacillus cibarius NKC220-2
NCBI: GCA_005887555

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	92.10	no
125439	motility	BacteriaNetⓘ	yes	86.30	no
125439	gram_stain	BacteriaNetⓘ	variable	85.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lentibacillus cibarius NKC220-2
NCBI: GCA_005887555.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	71.28	no
125438	anaerobic	anaerobicⓘ	no	97.34	no
125438	aerobic	aerobicⓘ	yes	71.44	no
125438	spore-forming	spore-formingⓘ	yes	62.68	no
125438	thermophilic	thermophileⓘ	no	89.27	yes
125438	flagellated	motile2+ⓘ	yes	80.02	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food.	Oh YJ, Kim JY, Jo HE, Park HK, Lim SK, Kwon MS, Choi HJ	J Microbiol	10.1007/s12275-020-9507-7	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lentibacillus cibarius (KACC 21232, JCM 33390)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_005887555

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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