Name: Steroidobacter agaridevorans JCM 33368
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164535

Type strain:

Species: Steroidobacter agaridevorans

Culture col. no.: JCM 33368, KCTC 72223

Strain history: M. Ikenaga; Kagoshima Univ., Japan <-- M. Sakai; Kagoshima Univ., Japan; SA29-B.

NCBI tax ID(s): 2695856 (species)

Special Collections

JCM
KCTC

Other strains from Steroidobacter agaridevorans

Section

Steroidobacter agaridevorans JCM 33368 is a mesophilic, Gram-negative bacterium that was isolated from Soybean rhizosphere soil from agricultural fields in Sanuki city.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Nevskiales*
	Family	*Steroidobacteraceae*
	Genus	*Steroidobacter*
	Species	**Steroidobacter agaridevorans**
	Full Scientific Name (LPSN)	Steroidobacter agaridevorans Ikenaga et al. 2021

Synonym

"Peristeroidobacter agaridevorans"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %95.382

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	35 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soybean rhizosphere soil from agricultural fields in Sanuki city
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kagawa prefecture
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Steroidobacter agaridevorans gene for 16S rRNA, partial sequence	AB174845	1460	GenBank ENA	2695856 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Steroidobacter agaridevorans SA29-B	GCA_009932555	scaffold	GenBank ENA	2695856 tax ID

[Ref.: #67770]

GC-content

62.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Steroidobacter agaridevorans SA29-B NCBI: GCA_009932555.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.382	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.609	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.582	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	81.242	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.954	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	74.633	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33368, KCTC 72223

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization and Distribution of Agar-degrading Steroidobacter agaridevorans sp. nov., Isolated from Rhizosphere Soils.	Ikenaga M, Kataoka M, Yin X, Murouchi A, Sakai M	Microbes Environ	10.1264/jsme2.ME20136	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Steroidobacter agaridevorans in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Steroidobacter agaridevorans SA29-B

Change proposal

Change proposal