Glycomyces buryatensis (CGMCC 4.7610, JCM 33362, 18)

Name: Glycomyces buryatensis (CGMCC 4.7610, JCM 33362, 18)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164532

Type strain

Strain Designation 18

Culture col. no. CGMCC 4.7610 JCM 33362 18 DSM 118905

NCBI tax ID(s) 2570927

Special Collections JCM Literature strains

History C.-H. Sun; Inst. of Med. Biotechnol., Chin. Acad. of Med. Sci., China; 18. <- JCM; JCM 33362

Links

Glycomyces buryatensis 18 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from Steppe soil from the Republic of Buryatia.

Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 285401

DSM 118905,JCM 33362

@ref 20215

Last LPSN update 2026-02-09 11:39:52

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Glycomycetales

Family Glycomycetaceae

Genus Glycomyces

Species Glycomyces buryatensis

Full scientific name Glycomyces buryatensis Nikitina et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.6
125439		94
125438		92.975
125438	positive	91.776
69590	positive

Multimedia

@ref:	126116
multimedia content:	DSM_118905.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_118905.jpg
caption:	M.65, 28°C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
126116	YEAST-STARCH-AGAR(B) (DSMZ Medium 656)	Medium recipe at MediaDive	Name: YEAST-STARCH-AGAR(B) (DSMZ Medium 656) Composition: Starch 15.0 g/l Agar 15.0 g/l Yeast extract 4.0 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Distilled water
126116	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
126116	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	28	mesophilic
69590	positive	growth	15-35
69590	positive	optimum	28-30	mesophilic
126116	positive	growth	28

Culture pH

@ref	Ability	Type	PH
69590	positive	optimum	7
69590	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
69590	aerobe
125439	obligate aerobe	90.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69590	NaCl	positive	growth	0-10 %(w/v)
69590	NaCl	positive	optimum	0-3 %(w/v)

Observation

@ref	Observation
67770	quinones: MK-10(H₄), MK-11(H₄)
69590	Whole-cell hydrolysates contain meso-diaminopimelic acid as the diagnostic diamino acid and the whole-cell sugars are galactose, glucose, ribose and xylose.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69590	58143 ChEBI	5-dehydro-D-gluconate	+	builds acid from
69590	13705 ChEBI	acetoacetate	+	carbon source
69590	17925 ChEBI	alpha-D-glucose	+	carbon source
69590	18305 ChEBI	arbutin	+	builds acid from
69590	73706 ChEBI	bromosuccinate	+	carbon source
69590		casein	+	hydrolysis
69590	17057 ChEBI	cellobiose	+	builds acid from
69590	62968 ChEBI	cellulose	-	assimilation
69590	15824 ChEBI	D-fructose	+	carbon source
69590	78697 ChEBI	D-fructose 6-phosphate	+	carbon source
69590	28847 ChEBI	D-fucose	+	carbon source
69590	12936 ChEBI	D-galactose	-	builds acid from
69590	15748 ChEBI	D-glucuronate	+	carbon source
69590	16899 ChEBI	D-mannitol	-	builds acid from
69590	63150 ChEBI	D-rhamnose	+	carbon source
69590	17814 ChEBI	D-salicin	+	carbon source
69590	17924 ChEBI	D-sorbitol	+	carbon source
69590	4853 ChEBI	esculin	+	hydrolysis
69590		esculin ferric citrate	+	builds acid from
69590	5291 ChEBI	gelatin	-	hydrolysis
69590	28066 ChEBI	gentiobiose	+	carbon source
69590	17234 ChEBI	glucose	-	fermentation
69590	17234 ChEBI	glucose	+	assimilation
69590	17754 ChEBI	glycerol	+	carbon source
69590	16136 ChEBI	hydrogen sulfide	+	assimilation
69590	35581 ChEBI	indole	-	assimilation
69590	17596 ChEBI	inosine	+	carbon source
69590	30849 ChEBI	L-arabinose	-	builds acid from
69590	29991 ChEBI	L-aspartate	+	carbon source
69590	29985 ChEBI	L-glutamate	+	carbon source
69590	15971 ChEBI	L-histidine	+	carbon source
69590	15589 ChEBI	L-malate	+	carbon source
69590	17895 ChEBI	L-tyrosine	+	hydrolysis
69590	17716 ChEBI	lactose	-	builds acid from
69590	17716 ChEBI	lactose	+	carbon source
69590	28053 ChEBI	melibiose	+	carbon source
69590	51850 ChEBI	methyl pyruvate	+	carbon source
69590	17632 ChEBI	nitrate	-	reduction
69590	16634 ChEBI	raffinose	-	builds acid from
69590	16634 ChEBI	raffinose	+	carbon source
69590	28017 ChEBI	starch	+	hydrolysis
69590	17992 ChEBI	sucrose	+	carbon source
69590	32528 ChEBI	turanose	+	carbon source
69590	53424 ChEBI	tween 20	+	assimilation
69590	53423 ChEBI	tween 40	+	assimilation
69590	53426 ChEBI	tween 80	+	assimilation
69590	18222 ChEBI	xylose	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
69590	16136 ChEBI	hydrogen sulfide
69590	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
69590	alpha-galactosidase	+	3.2.1.22
69590	alpha-glucosidase	+	3.2.1.20
69590	beta-galactosidase	+	3.2.1.23
69590	beta-glucosidase	+	3.2.1.21
69590	catalase	+	1.11.1.6
69590	cytochrome oxidase	-	1.9.3.1
69590	leucine arylamidase	+	3.4.11.1
69590	trypsin	+	3.4.21.4
69590	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

69590

Fatty acid	Percentage
C15:0 anteiso	33.5
C15:0 iso	16.4
C16:1 iso G	7.2
C16:0 iso	6.9
C14:0 iso	6.1
C17:0 anteiso	5.3

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Steppe soil from the Republic of Buryatia		Russia	RUS
69590	steppe soil	Buryatia	Russia	RUS	Europe
126116	steppe soil	Buryatia	Russia	RUS	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM491227v1 assembly for Glycomyces buryatensis 18	scaffold	GCA_004912275	2570927.3	2891487312	2570927	43.63

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Glycomyces buryatensis strain 18 16S ribosomal RNA gene, partial sequence	MK954461	1455		2570927

GC content

@ref	GC-content (mol%)	Method
67770	68	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Glycomyces buryatensis 18
NCBI: GCA_004912275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	83.10	no
125439	motility	BacteriaNetⓘ	no	94.00	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Glycomyces buryatensis 18
NCBI: GCA_004912275.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.78	no
125438	anaerobic	anaerobicⓘ	no	96.24	no
125438	aerobic	aerobicⓘ	yes	85.78	no
125438	spore-forming	spore-formingⓘ	yes	81.48	no
125438	thermophilic	thermophileⓘ	no	96.75	yes
125438	flagellated	motile2+ⓘ	no	92.98	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Identification of microbial species and proteins associated with colorectal cancer by reanalyzing CPTAC proteomic datasets.	Canderan J, Ye Y.	Sci Rep	10.1038/s41598-025-97984-3	2025
Phylogeny	Glycomyces buryatensis sp. nov., an actinobacterium isolated from steppe soil.	Nikitina E, Liu SW, Li FN, Buyantueva L, Abidueva E, Sun CH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003923	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69590	Elena Nikitina, Shao-Wei Liu, Fei-Na Li, Lyubov Buyantueva, Elena Abidueva and Cheng-HangSun: Glycomyces buryatensis sp. nov., an actinobacterium isolated from steppe soil. IJSEM 70: 2019 ( DOI 10.1099/ijsem.0.003923 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126116	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 118905
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Glycomyces buryatensis (CGMCC 4.7610, JCM 33362, 18)

Name and taxonomic classification