Kosakonia quasisacchari GDMCC1.1570 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from Wound secretion sample of a patient in West China Hospital of Sichuan University in Chengdu.
Gram-negative motile colony-forming facultative anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Kosakonia |
| Species Kosakonia quasisacchari |
| Full scientific name Kosakonia quasisacchari Wang et al. 2019 |
| @ref | Colony size | Colony color | Colony shape | Incubation period | Medium used | |
|---|---|---|---|---|---|---|
| 68027 | 2 mm | white | circular | 1 day | Nutrient agar (NA) |
| 68027 | Oxygen tolerancefacultative anaerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68027 | 27613 ChEBI | amygdalin | + | builds acid from | |
| 68027 | 18305 ChEBI | arbutin | + | builds acid from | |
| 68027 | 17057 ChEBI | cellobiose | + | builds acid from | |
| 68027 | 16947 ChEBI | citrate | + | assimilation | |
| 68027 | 17108 ChEBI | D-arabinose | + | builds acid from | |
| 68027 | 18333 ChEBI | D-arabitol | - | builds acid from | |
| 68027 | 15824 ChEBI | D-fructose | + | builds acid from | |
| 68027 | 28847 ChEBI | D-fucose | - | builds acid from | |
| 68027 | 12936 ChEBI | D-galactose | + | builds acid from | |
| 68027 | 17634 ChEBI | D-glucose | + | builds acid from | |
| 68027 | 62318 ChEBI | D-lyxose | - | builds acid from | |
| 68027 | 16899 ChEBI | D-mannitol | + | builds acid from | |
| 68027 | 16024 ChEBI | D-mannose | + | builds acid from | |
| 68027 | 16988 ChEBI | D-ribose | + | builds acid from | |
| 68027 | 17924 ChEBI | D-sorbitol | + | builds acid from | |
| 68027 | 16443 ChEBI | D-tagatose | - | builds acid from | |
| 68027 | 65327 ChEBI | D-xylose | + | builds acid from | |
| 68027 | 17113 ChEBI | erythritol | - | builds acid from | |
| 68027 | esculin ferric citrate | + | builds acid from | ||
| 68027 | 16813 ChEBI | galactitol | - | builds acid from | |
| 68027 | 28066 ChEBI | gentiobiose | + | builds acid from | |
| 68027 | 17754 ChEBI | glycerol | + | builds acid from | |
| 68027 | 28087 ChEBI | glycogen | - | builds acid from | |
| 68027 | 15443 ChEBI | inulin | - | builds acid from | |
| 68027 | 30849 ChEBI | L-arabinose | + | builds acid from | |
| 68027 | 18403 ChEBI | L-arabitol | - | builds acid from | |
| 68027 | 18287 ChEBI | L-fucose | - | builds acid from | |
| 68027 | 62345 ChEBI | L-rhamnose | + | builds acid from | |
| 68027 | 17266 ChEBI | L-sorbose | - | builds acid from | |
| 68027 | 65328 ChEBI | L-xylose | - | builds acid from | |
| 68027 | 17716 ChEBI | lactose | + | builds acid from | |
| 68027 | 17306 ChEBI | maltose | + | builds acid from | |
| 68027 | 6731 ChEBI | melezitose | - | builds acid from | |
| 68027 | 28053 ChEBI | melibiose | - | builds acid from | |
| 68027 | 320061 ChEBI | methyl alpha-D-glucopyranoside | + | builds acid from | |
| 68027 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | |
| 68027 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | |
| 68027 | 17268 ChEBI | myo-inositol | - | builds acid from | |
| 68027 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | |
| 68027 | potassium 2-dehydro-D-gluconate | - | builds acid from | ||
| 68027 | potassium 5-dehydro-D-gluconate | - | builds acid from | ||
| 68027 | 32032 ChEBI | potassium gluconate | - | builds acid from | |
| 68027 | 16634 ChEBI | raffinose | - | builds acid from | |
| 68027 | 15963 ChEBI | ribitol | - | builds acid from | |
| 68027 | 17814 ChEBI | salicin | + | builds acid from | |
| 68027 | 28017 ChEBI | starch | - | builds acid from | |
| 68027 | 17992 ChEBI | sucrose | + | builds acid from | |
| 68027 | 27082 ChEBI | trehalose | + | builds acid from | |
| 68027 | 32528 ChEBI | turanose | - | builds acid from | |
| 68027 | 16199 ChEBI | urea | - | hydrolysis | |
| 68027 | 17151 ChEBI | xylitol | - | builds acid from |
| @ref | ChEBI | Metabolite | Is antibiotic | Is sensitive | Sensitivity conc. | |
|---|---|---|---|---|---|---|
| 68027 | 2637 | amikacin | 2 µg/mL | |||
| 68027 | 2676 | amoxicillin | 2 µg/mL | |||
| 68027 | 161680 | aztreonam | 1 µg/mL | |||
| 68027 | 474053 | cefazolin | ||||
| 68027 | 478164 | cefepime | 1 µg/mL | |||
| 68027 | 3493 | cefoperazone | 27 µg/mL | |||
| 68027 | 209807 | cefoxitin | ||||
| 68027 | 29007 | ceftriaxone | 1 µg/mL | |||
| 68027 | 100241 | ciprofloxacin | 0.25 µg/mL | |||
| 68027 | 48947 | clavulanic acid | 2 µg/mL | |||
| 68027 | 404903 | ertapenem | 0.5 µg/mL | |||
| 68027 | 17833 | gentamicin | 1 µg/mL | |||
| 68027 | 471744 | imipenem | 1 µg/mL | |||
| 68027 | 63598 | levofloxacin | 0.25 µg/mL | |||
| 68027 | 43968 | meropenem | 37 µg/mL | |||
| 68027 | 50694 | minocycline | 22 µg/mL | |||
| 68027 | 71415 | nitrofurantoin | 64 µg/mL | |||
| 68027 | 8232 | piperacillin | 4 µg/mL | |||
| 68027 | 8309 | polymyxin b | 15 µg/mL | |||
| 68027 | 9332 | sulfamethoxazole | 20 µg/mL | |||
| 68027 | 9421 | tazobactam | 4 µg/mL | |||
| 68027 | 149836 | tigecycline | 0.5 µg/mL | |||
| 68027 | 28864 | tobramycin | 1 µg/mL | |||
| 68027 | 45924 | trimethoprim | 20 µg/mL |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|
| 67770 | Wound secretion sample of a patient in West China Hospital of Sichuan University in Chengdu | Sichuan Province | China | CHN | Asia | |
| 68027 | wound secretion sample of a patient in West China Hospital of Sichuan University | Chengdu, Sichuan Province | China | CHN | Asia |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 68027 | ASM433141v1 assembly for Kosakonia quasisacchari WCHEs120001 | contig | 2529380 | 57.94 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 68027 | Kosakonia quasisacchari 16S ribosomal RNA gene, partial sequence | MK567956 | 1536 | 2529380 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 68027 | 53.33 | genome sequence analysis |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 100.00 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 97.10 | no |
| 125438 | aerobic | aerobicⓘ | no | 76.52 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 92.26 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 100.00 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 70.87 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Kosakonia quasisacchari sp. nov. recovered from human wound secretion in China. | Wang C, Wu W, Wei L, Feng Y, Kang M, Xie Y, Zong Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003606 | 2019 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68027 | Chengcheng Wang, Wenjing Wu, Li Wei, Yu Feng, Mei Kang, Yi Xie, Zhiyong Zong: Kosakonia quasisacchari sp. nov. recovered from human wound secretion in China. IJSEM 69: 3155 - 3160 2019 ( DOI 10.1099/ijsem.0.003606 ) |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive164525.20251217.10
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