Name: Kosakonia quasisacchari GDMCC1.1570
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164525

Type strain:

Species: Kosakonia quasisacchari

Strain Designation: GDMCC1.1570, WCHEs120001

Culture col. no.: JCM 33347, GDMCC 1.1570, NCTC 14272

Strain history: Z. Zong; West China Hosp., China; WCHEs120001.

NCBI tax ID(s): 2529380 (species)

Section

Kosakonia quasisacchari GDMCC1.1570 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Wound secretion sample of a patient in West China Hospital of Sichuan University in Chengdu.

colony-forming
Gram-negative
motile
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Kosakonia*
	Species	**Kosakonia quasisacchari**
	Full Scientific Name (LPSN)	Kosakonia quasisacchari Wang et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #68027]	Gram stain	negative

[Ref.: #68027]	Motility	yes

[Ref.: #68027]	Colony size	2 mm
[Ref.: #68027]	Colony color	white
[Ref.: #68027]	Colony shape	circular
[Ref.: #68027]	Incubation period	1 day
[Ref.: #68027]	Cultivation medium used	Nutrient agar (NA)

Information on culture and growth conditions Culture and growth conditions

	Kind of temperature		Temperature
[Ref.: #67770]		growth	35 °C
[Ref.: #68027]		growth	4-40 °C
[Ref.: #68027]		optimum	35-37 °C
[Ref.: #68027]	no	growth	2 °C
[Ref.: #68027]	no	growth	42 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68027]	Temperature range	mesophilic
[Ref.: #68027]	Temperature range	psychrophilic
[Ref.: #68027]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #68027]			optimum	6.0-7.0
[Ref.: #68027]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68027]

Oxygen tolerance

facultative anaerobe

[Ref.: #68027]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68027]		NaCl		growth	0.0-9.0	%(w/v)
[Ref.: #68027]		NaCl	no	growth	10	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68027]	amygdalin ChEBI	+	builds acid from
[Ref.: #68027]	arbutin ChEBI	+	builds acid from
[Ref.: #68027]	cellobiose ChEBI	+	builds acid from
[Ref.: #68027]	citrate ChEBI	+	assimilation
[Ref.: #68027]	D-arabinose ChEBI	+	builds acid from
[Ref.: #68027]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68027]	D-fructose ChEBI	+	builds acid from
[Ref.: #68027]	D-fucose ChEBI	-	builds acid from
[Ref.: #68027]	D-galactose ChEBI	+	builds acid from
[Ref.: #68027]	D-glucose ChEBI	+	builds acid from
[Ref.: #68027]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68027]	D-mannitol ChEBI	+	builds acid from
[Ref.: #68027]	D-mannose ChEBI	+	builds acid from
[Ref.: #68027]	D-ribose ChEBI	+	builds acid from
[Ref.: #68027]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #68027]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68027]	D-xylose ChEBI	+	builds acid from
[Ref.: #68027]	erythritol ChEBI	-	builds acid from
[Ref.: #68027]	esculin ferric citrate	+	builds acid from
[Ref.: #68027]	galactitol ChEBI	-	builds acid from
[Ref.: #68027]	gentiobiose ChEBI	+	builds acid from
[Ref.: #68027]	glycerol ChEBI	+	builds acid from
[Ref.: #68027]	glycogen ChEBI	-	builds acid from
[Ref.: #68027]	inulin ChEBI	-	builds acid from
[Ref.: #68027]	L-arabinose ChEBI	+	builds acid from
[Ref.: #68027]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68027]	L-fucose ChEBI	-	builds acid from
[Ref.: #68027]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #68027]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68027]	L-xylose ChEBI	-	builds acid from
[Ref.: #68027]	lactose ChEBI	+	builds acid from
[Ref.: #68027]	maltose ChEBI	+	builds acid from
[Ref.: #68027]	melezitose ChEBI	-	builds acid from
[Ref.: #68027]	melibiose ChEBI	-	builds acid from
[Ref.: #68027]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #68027]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #68027]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #68027]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68027]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #68027]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #68027]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #68027]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #68027]	raffinose ChEBI	-	builds acid from
[Ref.: #68027]	ribitol ChEBI	-	builds acid from
[Ref.: #68027]	salicin ChEBI	+	builds acid from
[Ref.: #68027]	starch ChEBI	-	builds acid from
[Ref.: #68027]	sucrose ChEBI	+	builds acid from
[Ref.: #68027]	trehalose ChEBI	+	builds acid from
[Ref.: #68027]	turanose ChEBI	-	builds acid from
[Ref.: #68027]	urea ChEBI	-	hydrolysis
[Ref.: #68027]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #68027]	amikacin ChEBI	yes	2	µg/mL
[Ref.: #68027]	aztreonam ChEBI	yes	1	µg/mL
[Ref.: #68027]	cefazolin ChEBI				yes	4	µg/mL
[Ref.: #68027]	cefepime ChEBI	yes	1	µg/mL
[Ref.: #68027]	cefoperazone ChEBI	yes	27	µg/mL
[Ref.: #68027]	cefoxitin ChEBI				yes	4	µg/mL
[Ref.: #68027]	ceftriaxone ChEBI	yes	1	µg/mL
[Ref.: #68027]	ciprofloxacin ChEBI	yes	0.25	µg/mL
[Ref.: #68027]	ertapenem ChEBI	yes	0.5	µg/mL
[Ref.: #68027]	gentamicin ChEBI	yes	1	µg/mL
[Ref.: #68027]	imipenem ChEBI	yes	1	µg/mL
[Ref.: #68027]	levofloxacin ChEBI	yes	0.25	µg/mL
[Ref.: #68027]	meropenem ChEBI	yes	37	µg/mL
[Ref.: #68027]	minocycline ChEBI	yes	22	µg/mL
[Ref.: #68027]	nitrofurantoin ChEBI	yes	64	µg/mL
[Ref.: #68027]	polymyxin b ChEBI	yes	15	µg/mL
[Ref.: #68027]	tigecycline ChEBI	yes	0.5	µg/mL
[Ref.: #68027]	tobramycin ChEBI	yes	1	µg/mL
	Only first 10 entries are displayed. Click here to see all.

	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68027]	10	amoxicillin ChEBI	yes	2	µg/mL
[Ref.: #68027]	10	clavulanic acid ChEBI	yes	2	µg/mL
[Ref.: #68027]	16	piperacillin ChEBI	yes	4	µg/mL
[Ref.: #68027]	26	sulfamethoxazole ChEBI	yes	20	µg/mL
[Ref.: #68027]	16	tazobactam ChEBI	yes	4	µg/mL
[Ref.: #68027]	26	trimethoprim ChEBI	yes	20	µg/mL

	Metabolite production	Metabolite	Production
[Ref.: #68027]		hydrogen sulfide ChEBI	no
[Ref.: #68027]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68027]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68027]	arginine dihydrolase	+	3.5.3.6
[Ref.: #68027]	beta-galactosidase	+	3.2.1.23
[Ref.: #68027]	catalase	-	1.11.1.6
[Ref.: #68027]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68027]	deaminases	-
[Ref.: #68027]	gelatinase	-
[Ref.: #68027]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68027]	ornithine decarboxylase	-	4.1.1.17

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Wound secretion sample of a patient in West China Hospital of Sichuan University in Chengdu
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sichuan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #68027]	Sample type/isolated from	wound secretion sample of a patient in West China Hospital of Sichuan University
[Ref.: #68027]	Geographic location (country and/or sea, region)	Chengdu, Sichuan Province
[Ref.: #68027]	Country	China
[Ref.: #68027]	Country ISO 3 Code	CHN
[Ref.: #68027]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68027]	Kosakonia quasisacchari 16S ribosomal RNA gene, partial sequence	MK567956	1536	ENA	2529380 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68027]	Kosakonia quasisacchari WCHEs120001	GCA_004331415	contig	GenBank	2529380 tax ID

[Ref.: #68027]

GC-content

53.33 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kosakonia quasisacchari WCHEs120001 NCBI: GCA_004331415.1
[Ref.: #69480]	motile	yes	89.499	yes
[Ref.: #69480]	flagellated	no	60.654	no
[Ref.: #69480]	gram-positive	no	98.233	yes
[Ref.: #69480]	anaerobic	no	94.562	yes
[Ref.: #69480]	aerobic	no	62.844	yes
[Ref.: #69480]	halophile	no	94	no
[Ref.: #69480]	spore-forming	no	92.573	yes
[Ref.: #69480]	glucose-util	yes	94.975	no
[Ref.: #69480]	thermophile	no	99.665	no
[Ref.: #69480]	glucose-ferment	yes	90.662	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33347, GDMCC 1.1570, NCTC 14272

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kosakonia quasisacchari sp. nov. recovered from human wound secretion in China.	Wang C, Wu W, Wei L, Feng Y, Kang M, Xie Y, Zong Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.003606	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68027

Chengcheng Wang, Wenjing Wu, Li Wei, Yu Feng, Mei Kang, Yi Xie, Zhiyong Zong: Kosakonia quasisacchari sp. nov. recovered from human wound secretion in China. IJSEM 69: 3155 - 3160 2019 ( DOI 10.1099/ijsem.0.003606 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Kosakonia quasisacchari WCHEs120001

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