Name: Haloglomus irregulare JCM 33318
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164517

Type strain:

Species: Haloglomus irregulare

Culture col. no.: JCM 33318, CECT 9635

Strain history: C. Sánchez-Porro; Univ. of Seville, Spain; F16-60.

NCBI tax ID(s): 2234134 (species)

Section

Haloglomus irregulare JCM 33318 is a mesophilic, Gram-negative archaeon that was isolated from Isla Cristina marine saltern in Huelva.

Gram-negative
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloarculaceae*
	Genus	*Haloglomus*
	Species	**Haloglomus irregulare**
	Full Scientific Name (LPSN)	Haloglomus irregulare Durán-Viseras et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.958

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.938

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Isla Cristina marine saltern in Huelva
[Ref.: #67770]	Country	Spain
[Ref.: #67770]	Country ISO 3 Code	ESP
[Ref.: #67770]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MH424600 (>99% sequence identity) for Haloglomus irregulare subclade from Microbeatlas

Aquatic Samples	196
Soil Samples	81
Animal Samples	53
Plant Samples	1
Total Samples	331

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloglomus irregulare strain F16-60 16S ribosomal RNA gene, partial sequence	MH424600	1400	ENA	2234134 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloglomus irregulare F16-60	GCA_007421925	scaffold	GenBank	2234134 tax ID

[Ref.: #67770]

GC-content

68 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Haloglomus irregulare F16-60 NCBI: GCA_007421925.1
[Ref.: #69481]	spore-forming	no	81	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Haloglomus irregulare F16-60 NCBI: GCA_007421925.1
[Ref.: #69480]	motile	no	77.491	no
[Ref.: #69480]	flagellated	no	97.263	no
[Ref.: #69480]	gram-positive	no	96.418	no
[Ref.: #69480]	anaerobic	no	96.242	no
[Ref.: #69480]	aerobic	yes	86.665	no
[Ref.: #69480]	halophile	yes	83.194	no
[Ref.: #69480]	spore-forming	no	94.361	no
[Ref.: #69480]	glucose-util	yes	84.941	no
[Ref.: #69480]	thermophile	no	84.91	yes
[Ref.: #69480]	glucose-ferment	no	84.795	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33318, CECT 9635

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloglomus irregulare gen. nov., sp. nov., a New Halophilic Archaeon Isolated from a Marine Saltern.	Duran-Viseras A, Sanchez-Porro C, Ventosa A	Microorganisms	10.3390/microorganisms8020206	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Haloglomus irregulare F16-60

Haloglomus irregulare F16-60

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