Name: Lautropia dentalis JCM 33297
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164508

Type strain:

Species: Lautropia dentalis

Culture col. no.: JCM 33297, KCOM 2505

Strain history: J.-K. Kook; KCOM, Chosun Univ., South Korea; ChDC F240.

NCBI tax ID(s): 2490857 (species)

Special Collections

Section

Lautropia dentalis JCM 33297 is a mesophilic, Gram-negative bacterium that was isolated from Human subgingival dental plaque of a gingivitis lesion in the Republic of Korea.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Lautropia*
	Species	"Lautropia dentalis"
	Full Scientific Name (LPSN)	Lautropia dentalis Lim et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.8

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %92.455
[Ref.: #69481]	Ability of spore formation	no Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human subgingival dental plaque of a gingivitis lesion in the Republic of Korea
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lautropia dentalis 16S ribosomal RNA gene, partial sequence	MK748163	1454	GenBank ENA	2490857 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lautropia dentalis KCOM 2505	GCA_003892345	scaffold	GenBank ENA	2490857 tax ID

[Ref.: #67770]

GC-content

65 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lautropia dentalis KCOM 2505 NCBI: GCA_003892345.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lautropia dentalis KCOM 2505 NCBI: GCA_003892345.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.8	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.589	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	52.933	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.455	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.229	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	59.155	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33297, KCOM 2505

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lautropia dentalis sp. nov., Isolated from Human Dental Plaque of a Gingivitis Lesion.	Lim YK, Park SN, Lee WP, Shin JH, Jo E, Shin Y, Paek J, Chang YH, Kim H, Kook JK	Curr Microbiol	10.1007/s00284-019-01761-1	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Lautropia dentalis KCOM 2505

Lautropia dentalis KCOM 2505

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