Cite this strain

"Lautropia dentalis" (KCOM 2505, JCM 33297)

BacDive ID 164508

Type strain

Culture col. no. KCOM 2505 JCM 33297

NCBI tax ID(s) 2490857

Special Collections JCM

History JCM <-- J.-K. Kook; KCOM, Chosun Univ., South Korea; ChDC F240.

Links

"Lautropia dentalis" JCM 33297 is a bacterium that was isolated from Human subgingival dental plaque of a gingivitis lesion in the Republic of Korea.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 395537

JCM 33297

@ref 20215

Last LPSN update 2026-05-29 08:45:26

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Lautropia

Species "Lautropia dentalis"

Full scientific name Lautropia dentalis Lim et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.8

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		95.237
125438		92.455

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species
67770	Human subgingival dental plaque of a gingivitis lesion in the Republic of Korea	Homo sapiens

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM389234v1 assembly for Lautropia dentalis KCOM 2505	scaffold	GCA_003892345	2490857.3	2883064906	2490857	68.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Lautropia dentalis 16S ribosomal RNA gene, partial sequence	MK748163	1454		2490857

GC content

@ref	GC-content (mol%)	Method
67770	65	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM389234v1 assembly for Lautropia dentalis KCOM 2505
NCBI: GCA_003892345

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	80.60	no
125439	gram_stain	BacteriaNetⓘ	negative	84.23	no
125439	motility	BacteriaNetⓘ	yes	50.17	no
125439	spore_formation	BacteriaNetⓘ	no	95.24	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lautropia dentalis KCOM 2505
NCBI: GCA_003892345.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.80	no
125438	anaerobic	anaerobicⓘ	no	88.59	no
125438	aerobic	aerobicⓘ	yes	52.93	no
125438	spore-forming	spore-formingⓘ	no	92.46	no
125438	thermophilic	thermophileⓘ	no	91.23	no
125438	flagellated	motile2+ⓘ	yes	59.16	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling.	Hu Y, Amir A, Huang X, Li Y, Huang S, Wolfe E, Weiss S, Knight R, Xu ZZ.	Genome Res	10.1101/gr.276482.121	2022
Phylogeny	Lautropia dentalis sp. nov., Isolated from Human Dental Plaque of a Gingivitis Lesion.	Lim YK, Park SN, Lee WP, Shin JH, Jo E, Shin Y, Paek J, Chang YH, Kim H, Kook JK	Curr Microbiol	10.1007/s00284-019-01761-1	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Lautropia dentalis" (KCOM 2505, JCM 33297)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003892345

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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