Name: Algoriphagus aquimaris F21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164479

Type strain:

Species: Algoriphagus aquimaris

Strain Designation: F21

Culture col. no.: JCM 33187, KCTC 72106, KEMB 2250-007

Strain history: S.-S. Lee; Kyonggi Univ., South Korea; F21.

NCBI tax ID(s): 2547398 (species)

Section

Algoriphagus aquimaris F21 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Seashore sand in Pohang.

colony-forming
Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus aquimaris**
	Full Scientific Name (LPSN)	Algoriphagus aquimaris Kim et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69546]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #69546]	Cell length	1.5-3.5 µm

[Ref.: #69546]	Cell width	0.7-0.8 µm

[Ref.: #69546]	Cell shape	rod-shaped

[Ref.: #69546]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.015

[Ref.: #69546]	Colony size	1-2 mm
[Ref.: #69546]	Colony color	reddish orange
[Ref.: #69546]	Colony shape	circular
[Ref.: #69546]	Incubation period	2 days
[Ref.: #69546]	Cultivation medium used	MB or MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69546]

Culture medium

MB or MA

[Ref.: #69546]

Culture medium growth

		Temperature
[Ref.: #67770]	growth	37 °C
[Ref.: #69546]	growth	10-42 °C
[Ref.: #69546]	optimum	37 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #69546]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #69546]			optimum	6.0-7.0
[Ref.: #69546]			growth	5.5-9-0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69546]

Oxygen tolerance

aerobe

[Ref.: #69546]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69546]		NaCl		growth	>6.5	%(w/v)
[Ref.: #69546]		NaCl		growth	2-3	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #69546]	Observation	Polar lipids are phosphatidylcholine, phosphatidylethanolamine, glycolipid, four unidentified phospholipids, four unknown lipids and three unidentified aminolipids.
[Ref.: #69546]	Observation	The strain does not grow without NaCl. And no growth is observed below 4 or above 45 °C.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69546]	2-dehydro-D-gluconate ChEBI	+	assimilation
[Ref.: #69546]	2-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #69546]	3-hydroxybenzoate ChEBI	+	assimilation
[Ref.: #69546]	3-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #69546]	4-hydroxybenzoate ChEBI	+	assimilation
[Ref.: #69546]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #69546]	5-dehydro-D-gluconate ChEBI	+	assimilation
[Ref.: #69546]	adipate ChEBI	+	assimilation
[Ref.: #69546]	amygdalin ChEBI	-	assimilation
[Ref.: #69546]	amygdalin ChEBI	-	fermentation
[Ref.: #69546]	amygdalin ChEBI	-	oxidation
[Ref.: #69546]	arbutin ChEBI	-	assimilation
[Ref.: #69546]	casein	-	hydrolysis
[Ref.: #69546]	cellobiose ChEBI	+	assimilation
[Ref.: #69546]	D-arabinose ChEBI	-	assimilation
[Ref.: #69546]	D-arabitol ChEBI	-	assimilation
[Ref.: #69546]	D-fucose ChEBI	+	assimilation
[Ref.: #69546]	D-glucose ChEBI	-	assimilation
[Ref.: #69546]	D-glucose ChEBI	-	fermentation
[Ref.: #69546]	D-glucose ChEBI	-	oxidation
[Ref.: #69546]	D-lyxose ChEBI	-	assimilation
[Ref.: #69546]	D-mannitol ChEBI	-	oxidation
[Ref.: #69546]	D-mannitol ChEBI	+	assimilation
[Ref.: #69546]	D-mannitol ChEBI	+	fermentation
[Ref.: #69546]	D-mannose ChEBI	-	assimilation
[Ref.: #69546]	D-ribose ChEBI	+	assimilation
[Ref.: #69546]	D-sorbitol ChEBI	-	oxidation
[Ref.: #69546]	D-sorbitol ChEBI	+	assimilation
[Ref.: #69546]	D-sorbitol ChEBI	+	fermentation
[Ref.: #69546]	D-tagatose ChEBI	-	assimilation
[Ref.: #69546]	D-xylose ChEBI	+	assimilation
[Ref.: #69546]	decanoate ChEBI	-	assimilation
[Ref.: #69546]	erythritol ChEBI	-	assimilation
[Ref.: #69546]	esculin ChEBI	+	hydrolysis
[Ref.: #69546]	esculin hydrolysate	+	assimilation
[Ref.: #69546]	galactitol ChEBI	-	assimilation
[Ref.: #69546]	galactose ChEBI	+	assimilation
[Ref.: #69546]	gelatin ChEBI	+	hydrolysis
[Ref.: #69546]	gentiobiose ChEBI	-	assimilation
[Ref.: #69546]	gluconate ChEBI	+	assimilation
[Ref.: #69546]	glucose ChEBI	+	assimilation
[Ref.: #69546]	glycerol ChEBI	+	assimilation
[Ref.: #69546]	glycogen ChEBI	+	assimilation
[Ref.: #69546]	hydrogen sulfide ChEBI	-
[Ref.: #69546]	inulin ChEBI	-	assimilation
[Ref.: #69546]	itaconate ChEBI	-	assimilation
[Ref.: #69546]	L-alanine ChEBI	+	assimilation
[Ref.: #69546]	L-arabinose ChEBI	-	oxidation
[Ref.: #69546]	L-arabinose ChEBI	+	assimilation
[Ref.: #69546]	L-arabinose ChEBI	+	fermentation
[Ref.: #69546]	L-arabitol ChEBI	-	assimilation
[Ref.: #69546]	L-arginine ChEBI	+	assimilation
[Ref.: #69546]	L-fructose ChEBI	+	assimilation
[Ref.: #69546]	L-fucose ChEBI	-	assimilation
[Ref.: #69546]	L-fucose ChEBI	+	assimilation
[Ref.: #69546]	L-histidine ChEBI	+	assimilation
[Ref.: #69546]	L-proline ChEBI	+	assimilation
[Ref.: #69546]	L-rhamnose ChEBI	-	fermentation
[Ref.: #69546]	L-rhamnose ChEBI	-	oxidation
[Ref.: #69546]	L-serine ChEBI	-	assimilation
[Ref.: #69546]	L-tryptophan ChEBI	-	assimilation
[Ref.: #69546]	L-xylose ChEBI	-	assimilation
[Ref.: #69546]	lactate ChEBI	-	assimilation
[Ref.: #69546]	lactose ChEBI	-	assimilation
[Ref.: #69546]	malate ChEBI	-	assimilation
[Ref.: #69546]	maltose ChEBI	-	assimilation
[Ref.: #69546]	maltose ChEBI	+	assimilation
[Ref.: #69546]	mannitol ChEBI	+	assimilation
[Ref.: #69546]	mannose ChEBI	+	assimilation
[Ref.: #69546]	melezitose ChEBI	-	assimilation
[Ref.: #69546]	melibiose ChEBI	-	assimilation
[Ref.: #69546]	melibiose ChEBI	-	fermentation
[Ref.: #69546]	melibiose ChEBI	-	oxidation
[Ref.: #69546]	melibiose ChEBI	+	assimilation
[Ref.: #69546]	methyl alpha-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #69546]	methyl alpha-D-mannoside ChEBI	-	assimilation
[Ref.: #69546]	methyl beta-D-xylopyranoside ChEBI	-	assimilation
[Ref.: #69546]	myo-inositol ChEBI	-	assimilation
[Ref.: #69546]	myo-inositol ChEBI	-	oxidation
[Ref.: #69546]	myo-inositol ChEBI	+	fermentation
[Ref.: #69546]	N-acetyl-D-glucosamine ChEBI	+	assimilation
[Ref.: #69546]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #69546]	nitrate ChEBI	-	reduction
[Ref.: #69546]	nitrite ChEBI	-	reduction
[Ref.: #69546]	phenylacetate ChEBI	-	assimilation
[Ref.: #69546]	potassium gluconate ChEBI	+	assimilation
[Ref.: #69546]	propionate ChEBI	+	assimilation
[Ref.: #69546]	proteose	-	hydrolysis
[Ref.: #69546]	raffinose ChEBI	-	assimilation
[Ref.: #69546]	rhamnose ChEBI	-	assimilation
[Ref.: #69546]	ribitol ChEBI	+	assimilation
[Ref.: #69546]	ribose ChEBI	+	assimilation
[Ref.: #69546]	salicin ChEBI	-	assimilation
[Ref.: #69546]	salicin ChEBI	+	assimilation
[Ref.: #69546]	sodium acetate ChEBI	-	assimilation
[Ref.: #69546]	sodium citrate ChEBI	-	assimilation
[Ref.: #69546]	sodium malonate ChEBI	+	assimilation
[Ref.: #69546]	sorbitol ChEBI	-	assimilation
[Ref.: #69546]	sorbose ChEBI	-	assimilation
[Ref.: #69546]	starch ChEBI	-	assimilation
[Ref.: #69546]	starch ChEBI	+	hydrolysis
[Ref.: #69546]	suberic acid ChEBI	-	assimilation
[Ref.: #69546]	sucrose ChEBI	-	assimilation
[Ref.: #69546]	sucrose ChEBI	-	fermentation
[Ref.: #69546]	sucrose ChEBI	-	oxidation
[Ref.: #69546]	sucrose ChEBI	+	assimilation
[Ref.: #69546]	trehalose ChEBI	-	assimilation
[Ref.: #69546]	tryptophan ChEBI	-	energy source
[Ref.: #69546]	turanose ChEBI	-	assimilation
[Ref.: #69546]	tween 20 ChEBI	+	hydrolysis
[Ref.: #69546]	tween 40 ChEBI	+	hydrolysis
[Ref.: #69546]	tween 80 ChEBI	-	hydrolysis
[Ref.: #69546]	urea ChEBI	+	assimilation
[Ref.: #69546]	valerate ChEBI	+	assimilation
[Ref.: #69546]	xylitol ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #69546]	ampicillin ChEBI				yes	10	µg
[Ref.: #69546]	fosfomycin ChEBI	yes	30	µg
[Ref.: #69546]	gentamicin ChEBI				yes	10	µg
[Ref.: #69546]	kanamycin ChEBI	yes	30	µg
[Ref.: #69546]	norfloxacin ChEBI	yes	10	µg
[Ref.: #69546]	ofloxacin ChEBI	yes	5	µg
[Ref.: #69546]	penicillin g ChEBI				yes	10	µg
[Ref.: #69546]	rifampicin ChEBI	yes	5	µg
[Ref.: #69546]	spectinomycin ChEBI				yes	10	µg
[Ref.: #69546]	tetracycline ChEBI				yes	30	µg
[Ref.: #69546]	vancomycin ChEBI				yes	30	µg
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #69546]		hydrogen sulfide ChEBI	yes
[Ref.: #69546]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #69546]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #69546]	2-nitrophenyl beta-D-galactopyranoside	+	3.2.1.52
[Ref.: #69546]	acid phosphatase	+	3.1.3.2
[Ref.: #69546]	alkaline phosphatase	+	3.1.3.1
[Ref.: #69546]	alpha-fucosidase	-	3.2.1.51
[Ref.: #69546]	alpha-galactosidase	-	3.2.1.22
[Ref.: #69546]	alpha-glucosidase	+	3.2.1.20
[Ref.: #69546]	alpha-mannosidase	+	3.2.1.24
[Ref.: #69546]	beta-galactosidase	+	3.2.1.23
[Ref.: #69546]	beta-glucosidase	+	3.2.1.21
[Ref.: #69546]	beta-glucuronidase	-	3.2.1.31
[Ref.: #69546]	catalase	+	1.11.1.6
[Ref.: #69546]	cystine arylamidase	+	3.4.11.3
[Ref.: #69546]	cytochrome oxidase	+	1.9.3.1
[Ref.: #69546]	esterase (C 4)	+
[Ref.: #69546]	esterase Lipase (C 8)	+
[Ref.: #69546]	gelatinase	+
[Ref.: #69546]	leucine arylamidase	+	3.4.11.1
[Ref.: #69546]	lipase (C 14)	+
[Ref.: #69546]	lysine decarboxylase	-	4.1.1.18
[Ref.: #69546]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #69546]	N-acetyl-glucosidase	+
[Ref.: #69546]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #69546]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #69546]	trypsin	+	3.4.21.4
[Ref.: #69546]	tryptophan deaminase	+	4.1.99.1
[Ref.: #69546]	tryptophan deaminase	-	4.1.99.1
[Ref.: #69546]	urease	-	3.5.1.5
[Ref.: #69546]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #69546]

Fatty acid	Percentage
C15:0 iso	34.8
C17:0 iso 3OH	12.5
C16:1 w6c/C16:1 w7c	10.9
C15:0 anteiso	5.5
C16:0 iso	5.5
C16:0 iso 3OH	4.3
C16:0 iso	4.1
C15:0 iso 3OH	3.9
C16:1 w5c	1.7
C15:1 iso	1.6
C17:1 w6c	1.5
C17:0 2OH	1.3
C14:0 iso	1.3
C15:0	1.1
C16:0 3OH	0.7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seashore sand in Pohang
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #69546]	Sample type/isolated from	seashore sand sampled in Pohang
[Ref.: #69546]	Geographic location (country and/or sea, region)	Pohang
[Ref.: #69546]	Country	Republic of Korea
[Ref.: #69546]	Country ISO 3 Code	KOR
[Ref.: #69546]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Algoriphagus sp. strain F21 16S ribosomal RNA gene, partial sequence	MK249690	1436	ENA	2547398 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Algoriphagus aquimaris F21	GCA_004358035	scaffold	GenBank	2547398 tax ID
[Ref.: #69546]	genome sequence	SMUW00000000		GenBank	2547398 tax ID
[Ref.: #66792]	Algoriphagus sp. F21	2547398.3	wgs	PATRIC	2547398 tax ID	*

[Ref.: #69546]

GC-content

42 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algoriphagus aquimaris F21 NCBI: GCA_004358035.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algoriphagus sp. F21 PATRIC: 2547398.3
[Ref.: #69480]	motile	no	92.678	no
[Ref.: #69480]	gram-positive	no	97.551	no
[Ref.: #69480]	anaerobic	no	97.66	no
[Ref.: #69480]	aerobic	yes	84.93	no
[Ref.: #69480]	halophile	no	70.334	no
[Ref.: #69480]	spore-forming	no	94.445	no
[Ref.: #69480]	glucose-util	yes	87.507	no
[Ref.: #69480]	flagellated	no	97.335	no
[Ref.: #69480]	thermophile	no	98.512	yes
[Ref.: #69480]	glucose-ferment	no	89.05	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33187, KCTC 72106, KEMB 2250-007

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus aquimaris sp. nov., isolated from seashore sand.	Kim J, Yoon SH, Yang KH, Kim S, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003793	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69546

Jinsoo Kim, Sung-Ho Yoon, Keun-Hyeok Yang, Sungchul Kim, and Sang-Seob Lee: Algoriphagus aquimaris sp. nov., isolated from seashore sand. IJSEM 70: 2019 ( DOI 10.1099/ijsem.0.003793 )

* These data were automatically processed and therefore are not curated

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Algoriphagus aquimaris F21

Algoriphagus sp. F21

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