Name: Robertmurraya yapensis XXST-01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164475

Type strain:

Species: Robertmurraya yapensis

Strain Designation: XXST-01

Culture col. no.: JCM 33181, MCCC 1A14143

Strain history: X. Tang; Third Inst. of State Oceanic Admin., China; XXST-01.

NCBI tax ID(s): 2492960 (species)

Section

Robertmurraya yapensis XXST-01 is a spore-forming, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from Deep-sea sediment at 6300 m of the Yap Trench.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Robertmurraya*
	Species	"Robertmurraya yapensis"
	Full Scientific Name (LPSN)	Robertmurraya yapensis (Xu et al. 2020) Gupta 2023

Synonym

"Bacillus yapensis"

Information on morphological and physiological properties Morphology

[Ref.: #68084]	Gram stain	positive

[Ref.: #68084]	Cell length	3.1 µm

[Ref.: #68084]	Cell width	0.7 µm

[Ref.: #68084]	Cell shape	rod-shaped

[Ref.: #68084]	Motility	yes

[Ref.: #68084]	Colony size	2.0-4.0 mm
[Ref.: #68084]	Colony shape	circular
[Ref.: #68084]	Incubation period	2 days
[Ref.: #68084]	Cultivation medium used	Trypticase Soy Agar (TSA)

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	37 °C
[Ref.: #68084]	growth	10-45 °C
[Ref.: #68084]	optimum	37 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68084]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68084]			optimum	7
[Ref.: #68084]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68084]	Type of spore	endospore
[Ref.: #68084]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68084]		NaCl		growth	0.0-6.0	%
[Ref.: #68084]		NaCl		optimum	0.0-0.5	%

[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #68084]	Observation	The polar lipids are diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylethanolamine (PE), an unidentified phospholipid (PL) and four unidentified aminophospholipids (APL)
[Ref.: #68084]	Observation	The predominant ubiquinone is MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68084]	cellobiose ChEBI	+	builds acid from
[Ref.: #68084]	cellulose ChEBI	-	hydrolysis
[Ref.: #68084]	D-fructose ChEBI	+	builds acid from
[Ref.: #68084]	D-glucose ChEBI	+	assimilation
[Ref.: #68084]	D-glucose ChEBI	+	builds acid from
[Ref.: #68084]	D-mannose ChEBI	+	builds acid from
[Ref.: #68084]	esculin ferric citrate	+	builds acid from
[Ref.: #68084]	gentiobiose ChEBI	+	builds acid from
[Ref.: #68084]	maltose ChEBI	+	assimilation
[Ref.: #68084]	maltose ChEBI	+	builds acid from
[Ref.: #68084]	mannose ChEBI	+	assimilation
[Ref.: #68084]	nitrate ChEBI	+	reduction
[Ref.: #68084]	potassium gluconate ChEBI	+/-	builds acid from
[Ref.: #68084]	salicin ChEBI	+	builds acid from
[Ref.: #68084]	skimmed milk	-	hydrolysis
[Ref.: #68084]	starch ChEBI	-	hydrolysis
[Ref.: #68084]	starch ChEBI	+	builds acid from
[Ref.: #68084]	tween 20 ChEBI	-	hydrolysis
[Ref.: #68084]	tween 40 ChEBI	-	hydrolysis
[Ref.: #68084]	tween 60 ChEBI	-	hydrolysis
[Ref.: #68084]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68084]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68084]	acid phosphatase	+/-	3.1.3.2
[Ref.: #68084]	alkaline phosphatase	+/-	3.1.3.1
[Ref.: #68084]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #68084]	alpha-fucosidase	+	3.2.1.51
[Ref.: #68084]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68084]	alpha-mannosidase	+/-	3.2.1.24
[Ref.: #68084]	beta-glucosidase	+	3.2.1.21
[Ref.: #68084]	catalase	+	1.11.1.6
[Ref.: #68084]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68084]	esterase (C 4)	+
[Ref.: #68084]	esterase Lipase (C 8)	+
[Ref.: #68084]	naphthol-AS-BI-phosphohydrolase	+/-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment at 6300 m of the Yap Trench
[Ref.: #67770]	Country	Pacific Ocean

[Ref.: #68084]	Sample type/isolated from	sediment collected at a water depth of 6300 m
[Ref.: #68084]	Sampling date	2017-06
[Ref.: #68084]	Geographic location (country and/or sea, region)	West Pacific Yap Trench
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68084]	Bacillus yapensis 16S ribosomal RNA gene, partial sequence	MK243676	1458	ENA	2492960 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68084]	Bacillus yapensis XXST-01	GCA_005280205	contig	GenBank	2492960 tax ID
[Ref.: #66792]	Bacillus yapensis XXST-01	GCA_003966255	contig	GenBank	2492960 tax ID	*
[Ref.: #66792]	Bacillus yapensis XXST-01	2885763063	draft	JGI IMG/M	2492960 tax ID	*

[Ref.: #67770]

GC-content

38.2 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33181, MCCC 1A14143

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus yapensis sp. nov., a novel piezotolerant bacterium isolated from deep-sea sediment of the Yap Trench, Pacific Ocean.	Xu X, Yu L, Xu G, Wang Q, Wei S, Tang X	Antonie Van Leeuwenhoek	10.1007/s10482-019-01348-7	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68084

Xiashutong Xu, Libo Yu, Guangxin Xu, Qilin Wang, Shiping Wie, Xixiang Tang: Bacillus yapensis sp. nov., a novel piezotolerant bacterium isolated from deep-sea sediment of the Yap Trench, Pacific Ocean. Antonie Van Leeuwenhoek 113: 389 - 396 2020 ( DOI 10.1007/s10482-019-01348-7 )

* These data were automatically processed and therefore are not curated

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