Name: Flammeovirga pectinis L12M1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164470

Type strain:

Species: Flammeovirga pectinis

Strain Designation: L12M1

Culture col. no.: JCM 33169, KCTC 62750

Strain history: J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; L12M1.

NCBI tax ID(s): 2494373 (species)

Section

Flammeovirga pectinis L12M1 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Gut of the Korean scallop, Patinopecten yessoensis.

Gram-negative
motile
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Flammeovirgaceae*
	Genus	*Flammeovirga*
	Species	**Flammeovirga pectinis**
	Full Scientific Name (LPSN)	Flammeovirga pectinis Jeong et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69516]	Gram stain	negative

[Ref.: #69516]	Cell shape	rod-shaped

[Ref.: #69516]	Motility	yes

[Ref.: #69516]	Flagellum arrangement	gliding

[Ref.: #69516]	Colony color	reddish-orange
[Ref.: #69516]	Incubation period	2 days
[Ref.: #69516]	Cultivation medium used	MA Plates

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69516]

Culture medium

MA Plates

[Ref.: #69516]

Culture medium growth

		Temperature
[Ref.: #67770]	growth	25 °C
[Ref.: #69516]	growth	4.0-25.0 °C
[Ref.: #69516]	optimum	25 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #69516]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #69516]			optimum	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69516]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69516]		NaCl		growth	1.5-3.0	%(w/v)
[Ref.: #69516]		NaCl		optimum	2	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69516]	amygdalin ChEBI	+	builds acid from
[Ref.: #69516]	cellobiose ChEBI	+	builds acid from
[Ref.: #69516]	D-galactose ChEBI	+	builds acid from
[Ref.: #69516]	D-glucose ChEBI	+	builds acid from
[Ref.: #69516]	D-mannose ChEBI	+	builds acid from
[Ref.: #69516]	esculin ferric citrate	+	builds acid from
[Ref.: #69516]	gentiobiose ChEBI	+	builds acid from
[Ref.: #69516]	glycogen ChEBI	+	builds acid from
[Ref.: #69516]	L-fucose ChEBI	+	builds acid from
[Ref.: #69516]	lactose ChEBI	+	builds acid from
[Ref.: #69516]	maltose ChEBI	+	builds acid from
[Ref.: #69516]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #69516]	nitrate ChEBI	+	reduction
[Ref.: #69516]	starch ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #69516]		acetoin ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #69516]	acid phosphatase	+	3.1.3.2
[Ref.: #69516]	alkaline phosphatase	+	3.1.3.1
[Ref.: #69516]	catalase	+	1.11.1.6
[Ref.: #69516]	cytochrome oxidase	-	1.9.3.1
[Ref.: #69516]	leucine arylamidase	+	3.4.11.1
[Ref.: #69516]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #69516]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #69516]	valine arylamidase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Gut of the Korean scallop, Patinopecten yessoensis
[Ref.: #67770]	Host species	Patinopecten yessoensis

[Ref.: #69516]	Sample type/isolated from	gut sample from Korean scallop Patinopecten yessoensis
[Ref.: #69516]	Geographic location (country and/or sea, region)	East Sea of Korea
[Ref.: #69516]	Country	Republic of Korea
[Ref.: #69516]	Country ISO 3 Code	KOR
[Ref.: #69516]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flammeovirga sp. strain L12M1 16S ribosomal RNA gene, partial sequence	MK285601	1418	ENA	2494373 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flammeovirga pectinis L12M1	GCA_003970675	complete	GenBank	2494373 tax ID
[Ref.: #69516]	genome sequence	CP034562		GenBank	2494373 tax ID
[Ref.: #66792]	Flammeovirga sp. L12M1	2494373.3	complete	PATRIC	2494373 tax ID	*

[Ref.: #67770]

GC-content

32.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flammeovirga sp. L12M1 PATRIC: 2494373.3
[Ref.: #69480]	motile	no	85.35	no
[Ref.: #69480]	gram-positive	no	98.591	no
[Ref.: #69480]	anaerobic	no	96.72	no
[Ref.: #69480]	aerobic	yes	76.203	no
[Ref.: #69480]	halophile	no	80.123	no
[Ref.: #69480]	spore-forming	no	89.946	no
[Ref.: #69480]	glucose-util	yes	84.672	no
[Ref.: #69480]	flagellated	no	91.198	no
[Ref.: #69480]	thermophile	no	97.857	no
[Ref.: #69480]	glucose-ferment	no	81.692	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33169, KCTC 62750

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flammeovirga pectinis sp. nov., isolated from the gut of the Korean scallop, Patinopecten yessoensis.	Jeong YS, Kang W, Sung H, Lee JY, Yun JH, Shin NR, Kim HS, Lee SY, Han JE, Lee JY, Tak EJ, Kim PS, Hyun DW, Jung MJ, Whon TW, Kang MS, Lee KE, Lee BH, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.003783	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69516

Yun-Seok Jeong, Woorim Kang, Hojun Sung, June-Young Lee, Ji-Hyun Yun, Na-Ri Shin, Hyun Sik Kim, So-Yeon Lee, Jeong Eun Han, Jae-Yun Lee, Euon Jung Tak, Pil Soo Kim, Dong-Wook Hyun, Mi-Ja Jung, Tae Woong Whon, Myung-Suk Kang, Ki-Eun Lee, Byoung-Hee Lee, Jin-Woo Bae: Flammeovirga pectinis sp. nov., isolated from the gut of the Korean scallop, Patinopecten yessoensis. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003783 )

* These data were automatically processed and therefore are not curated

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Flammeovirga sp. L12M1

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