Name: Jiella endophytica JCM 33167
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164469

Type strain:

Species: Jiella endophytica

Culture col. no.: JCM 33167, CGMCC 1.13863

Strain history: L. Tuo; Zunyi Med. Univ., China; CBS5Q-3.

NCBI tax ID(s): 2558362 (species)

Section

Jiella endophytica JCM 33167 is a mesophilic bacterium that was isolated from Surface-sterilised root of Ficus microcarpa L.f. collected from Guangxi.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Aurantimonadaceae*
	Genus	*Jiella*
	Species	**Jiella endophytica**
	Full Scientific Name (LPSN)	Jiella endophytica Tuo et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surface-sterilised root of Ficus microcarpa L.f. collected from Guangxi
[Ref.: #67770]	Host species	Ficus microcarpa
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Jiella endophytica 16S ribosomal RNA gene, partial sequence	MK693022	1441	ENA	2558362 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Jiella endophytica CBS5Q-3	GCA_004519335	contig	GenBank	2558362 tax ID

[Ref.: #67770]

GC-content

66.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Jiella endophytica CBS5Q-3 NCBI: GCA_004519335.1
[Ref.: #69480]	motile	yes	89.308	no
[Ref.: #69480]	flagellated	no	57.949	no
[Ref.: #69480]	gram-positive	no	97.966	no
[Ref.: #69480]	anaerobic	no	98.348	no
[Ref.: #69480]	aerobic	yes	90.832	no
[Ref.: #69480]	halophile	no	76.527	no
[Ref.: #69480]	spore-forming	no	93.913	no
[Ref.: #69480]	glucose-util	yes	93.274	no
[Ref.: #69480]	thermophile	no	95.27	yes
[Ref.: #69480]	glucose-ferment	no	90.735	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33167, CGMCC 1.13863

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jiella endophytica sp. nov., a novel endophytic bacterium isolated from root of Ficus microcarpa Linn. f.	Tuo L, Yan XR, Xiao JH	Antonie Van Leeuwenhoek	10.1007/s10482-019-01274-8	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Jiella endophytica in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Jiella endophytica CBS5Q-3

Change proposal

Change proposal