Name: Puteibacter caeruleilacunae JC036
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164456

Type strain:

Species: Puteibacter caeruleilacunae

Strain Designation: JC036

Culture col. no.: JCM 33128, MCCC 1K03579

Strain history: X. Shi and T. Fu; Coll. of Mar. Life Sci., Ocean Univ. of China, China; JC036.

NCBI tax ID(s): 2528631 (species)

Section

Puteibacter caeruleilacunae JC036 is a mesophilic, Gram-negative bacterium that was isolated from Yongle Blue Hole of the South China Sea at a water depth of 190 m.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prolixibacteraceae*
	Genus	*Puteibacter*
	Species	**Puteibacter caeruleilacunae**
	Full Scientific Name (LPSN)	Puteibacter caeruleilacunae Sun et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69599]	Gram stain	negative

[Ref.: #69599]	Cell length	1.0-3.0 µm

[Ref.: #69599]	Cell width	0.3-0.5 µm

[Ref.: #69599]	Colony color	creamy white
[Ref.: #69599]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69599]

Culture medium

Marine agar (MA)

[Ref.: #69599]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C
[Ref.: #69599]			growth	4-37 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #69599]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69599]		NaCl		optimum	2.0-6.0	%

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Observation

The major polar lipids are a phospholipid(PL), phosphatidylethanolamine (PE), an aminophospholipid (PN)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69599]	alginate ChEBI	-	hydrolysis
[Ref.: #69599]	alpha-cyclodextrin ChEBI	+	assimilation
[Ref.: #69599]	alpha-D-glucose ChEBI	+	assimilation
[Ref.: #69599]	alpha-D-glucose 6-phosphate ChEBI	+	assimilation
[Ref.: #69599]	alpha-hydroxybutyrate	+	assimilation
[Ref.: #69599]	beta-cyclodextrin ChEBI	+	assimilation
[Ref.: #69599]	casein	+	hydrolysis
[Ref.: #69599]	cellobiose ChEBI	+	assimilation
[Ref.: #69599]	cellobiose ChEBI	+	builds acid from
[Ref.: #69599]	D-fructose ChEBI	+	assimilation
[Ref.: #69599]	D-galactose ChEBI	+	assimilation
[Ref.: #69599]	D-galacturonic acid ChEBI	+	assimilation
[Ref.: #69599]	D-glucose 6-phosphate ChEBI	+	assimilation
[Ref.: #69599]	D-mannitol ChEBI	+	assimilation
[Ref.: #69599]	D-mannose ChEBI	+	assimilation
[Ref.: #69599]	dna ChEBI	-	hydrolysis
[Ref.: #69599]	esculin ChEBI	+	builds acid from
[Ref.: #69599]	gelatin ChEBI	+	builds acid from
[Ref.: #69599]	glucose ChEBI	+	builds acid from
[Ref.: #69599]	glycyl-l-glutamate ChEBI	+	assimilation
[Ref.: #69599]	inosine ChEBI	+	assimilation
[Ref.: #69599]	L-alanine ChEBI	+	assimilation
[Ref.: #69599]	L-asparagine ChEBI	+	assimilation
[Ref.: #69599]	L-glutamine ChEBI	+	assimilation
[Ref.: #69599]	L-rhamnose ChEBI	+	assimilation
[Ref.: #69599]	L-serine ChEBI	+	assimilation
[Ref.: #69599]	L-threonine ChEBI	+	assimilation
[Ref.: #69599]	lactate ChEBI	+	assimilation
[Ref.: #69599]	maltose ChEBI	+	assimilation
[Ref.: #69599]	maltose ChEBI	+	builds acid from
[Ref.: #69599]	melezitose ChEBI	+	assimilation
[Ref.: #69599]	N-acetyl-beta-D-mannosamine ChEBI	+	assimilation
[Ref.: #69599]	N-acetyl-D-glucosamine ChEBI	+	assimilation
[Ref.: #69599]	ribitol ChEBI	+	assimilation
[Ref.: #69599]	salicin ChEBI	+	assimilation
[Ref.: #69599]	starch ChEBI	-	hydrolysis
[Ref.: #69599]	sucrose ChEBI	+	assimilation
[Ref.: #69599]	sucrose ChEBI	+	builds acid from
[Ref.: #69599]	thymidine ChEBI	+	assimilation
[Ref.: #69599]	trehalose ChEBI	+	assimilation
[Ref.: #69599]	trehalose ChEBI	+	builds acid from
[Ref.: #69599]	turanose ChEBI	+	assimilation
[Ref.: #69599]	tween 20 ChEBI	-	hydrolysis
[Ref.: #69599]	tween 40 ChEBI	-	hydrolysis
[Ref.: #69599]	tween 80 ChEBI	-	hydrolysis
[Ref.: #69599]	uridine 5'-monophosphate ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity
[Ref.: #69599]		gelatinase	+

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #69599]

Fatty acid	Percentage
C15:0 iso	34.8
C16:1 W7c / C16:1 W6c	1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Yongle Blue Hole of the South China Sea at a water depth of 190 m

[Ref.: #69599]	Sample type/isolated from	Yongle Blue Hole of the South China Sea at a water depth of 190 m.
[Ref.: #69599]	Geographic location (country and/or sea, region)	Yongle Blue Hole of the South China Sea
[Ref.: #69599]	Country	China
[Ref.: #69599]	Country ISO 3 Code	CHN
[Ref.: #69599]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prolixibacteraceae bacterium strain JC036 16S ribosomal RNA gene, partial sequence	MH746935	1530	ENA	2528631 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Puteibacter caeruleilacunae JC036	GCA_005217565	contig	GenBank	2528631 tax ID
[Ref.: #69599]	genome sequence	SJCO00000000		GenBank	2528631 tax ID

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GC-content

37.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Puteibacter caeruleilacunae JC036 NCBI: GCA_005217565.1
[Ref.: #69480]	motile	no	82.227	no
[Ref.: #69480]	flagellated	no	95.744	no
[Ref.: #69480]	gram-positive	no	97.313	no
[Ref.: #69480]	anaerobic	yes	75.106	no
[Ref.: #69480]	aerobic	no	88.341	no
[Ref.: #69480]	halophile	no	77.548	no
[Ref.: #69480]	spore-forming	no	91.836	no
[Ref.: #69480]	glucose-util	yes	91.657	no
[Ref.: #69480]	thermophile	no	98.825	no
[Ref.: #69480]	glucose-ferment	no	50.576	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33128, MCCC 1K03579

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Puteibacter caeruleilacunae gen. nov., sp. nov., a facultatively anaerobic bacterium isolated from Yongle Blue Hole in the South China Sea.	Sun W, Fu T, Jia C, Yao P, Fu L, Zhou S, Gao X, Liu L, Yang Z, Shi X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003948	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69599

Wen Sun, Tianyu Fu, Chao Jia, Liang Fu, Shun Zhou, Peng Yao, Xueyu Gao, Lijun Liu, Zuosheng Yang, Xiaochong Shi, and Xiao-Hua Zhang: Puteibacter caeruleilacunae gen. nov., sp. nov., a facultatively anaerobic bacterium isolated from Yongle Blue Hole in the South China Sea. IJSEM ( DOI 10.1099/ijsem.0.003948 )

* These data were automatically processed and therefore are not curated

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