Name: Tessaracoccus antarcticus JDX10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164455

Type strain:

Species: Tessaracoccus antarcticus

Strain Designation: JDX10

Culture col. no.: JCM 33126, KCTC 49242, MCCC 1H00351

Strain history: Z.-J. Du; Shandong Univ. at Weihai, China; JDX10.

NCBI tax ID(s): 2479848 (species)

Section

Tessaracoccus antarcticus JDX10 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Soil from Fildes Peninsula.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Tessaracoccus*
	Species	**Tessaracoccus antarcticus**
	Full Scientific Name (LPSN)	Tessaracoccus antarcticus Zhou et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69593]	Gram stain	positive

[Ref.: #69593]	Cell length	0.8-1.3 µm

[Ref.: #69593]	Cell width	0.4-0.6 µm

[Ref.: #69593]	Cell shape	rod-shaped

[Ref.: #69593]	Motility	no

[Ref.: #69593]	Colony size	1.5-2.5 mm
[Ref.: #69593]	Incubation period	3 days
[Ref.: #69593]	Cultivation medium used	Trypticase Soy Agar (TSA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69593]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #69593]

Culture medium growth

		Temperature
[Ref.: #67770]	growth	28 °C
[Ref.: #69593]	growth	4-40 °C
[Ref.: #69593]	optimum	28 °C
[Ref.: #69593]	growth	14-41 °C
[Ref.: #69593]	optimum	28-30 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #69593]	Temperature range	mesophilic

		pH
[Ref.: #69593]	optimum	7.5
[Ref.: #69593]	optimum	5.0-6.0
[Ref.: #69593]	growth	6.0-9.0
[Ref.: #69593]	growth	4.0-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69593]

Oxygen tolerance

anaerobe

	Salt		Salt conc.
[Ref.: #69593]	NaCl	growth	0.0-3.0	%(w/v)
[Ref.: #69593]	NaCl	optimum	1	%(w/v)
[Ref.: #69593]	NaCl	growth	0-4	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-10(H₄)
[Ref.: #69593]	Observation	LL-Diaminopimelic acid is the diagnostic diamino acid of the cell-wall peptidoglycan. The major polar lipids are diphosphatidylglycerol, phosphatidylglycerol and one unidentified glycolipid.
[Ref.: #69593]	Observation	Reduces nitrate to nitrite, but not to N2. ONPG test and Simmons' citrate utilization.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69593]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #69593]	alginate ChEBI	+	hydrolysis
[Ref.: #69593]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #69593]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #69593]	casein	-	hydrolysis
[Ref.: #69593]	D-arabinose ChEBI	+	builds acid from
[Ref.: #69593]	D-fructose ChEBI	+	builds acid from
[Ref.: #69593]	D-fructose ChEBI	+	carbon source
[Ref.: #69593]	D-galactose ChEBI	+	builds acid from
[Ref.: #69593]	D-glucose ChEBI	+	builds acid from
[Ref.: #69593]	D-mannitol ChEBI	+	builds acid from
[Ref.: #69593]	D-mannose ChEBI	+	builds acid from
[Ref.: #69593]	D-salicin ChEBI	+	carbon source
[Ref.: #69593]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #69593]	D-xylose ChEBI	+	builds acid from
[Ref.: #69593]	gentiobiose ChEBI	+	builds acid from
[Ref.: #69593]	gentiobiose ChEBI	+	carbon source
[Ref.: #69593]	glucuronamide ChEBI	+	carbon source
[Ref.: #69593]	glycogen ChEBI	+	builds acid from
[Ref.: #69593]	hydrogen sulfide ChEBI	+
[Ref.: #69593]	indole ChEBI	+
[Ref.: #69593]	L-arabinose ChEBI	+	builds acid from
[Ref.: #69593]	L-fucose ChEBI	+	builds acid from
[Ref.: #69593]	lactose ChEBI	+	carbon source
[Ref.: #69593]	maltose ChEBI	+	builds acid from
[Ref.: #69593]	maltose ChEBI	+	carbon source
[Ref.: #69593]	n-acetyl-D-galactosamine ChEBI	+	carbon source
[Ref.: #69593]	starch ChEBI	-	hydrolysis
[Ref.: #69593]	sucrose ChEBI	+	builds acid from
[Ref.: #69593]	trehalose ChEBI	+	builds acid from
[Ref.: #69593]	trehalose ChEBI	+	carbon source
[Ref.: #69593]	turanose ChEBI	+	carbon source
[Ref.: #69593]	tween 20 ChEBI	+	hydrolysis
[Ref.: #69593]	tween 40 ChEBI	-	hydrolysis
[Ref.: #69593]	tween 60 ChEBI	-	hydrolysis
[Ref.: #69593]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #69593]	acetoin ChEBI	no
[Ref.: #69593]	hydrogen sulfide ChEBI	yes
[Ref.: #69593]	indole ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #69593]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #69593]	acid phosphatase	+	3.1.3.2
[Ref.: #69593]	alkaline phosphatase	-	3.1.3.1
[Ref.: #69593]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #69593]	alpha-fucosidase	-	3.2.1.51
[Ref.: #69593]	alpha-galactosidase	+	3.2.1.22
[Ref.: #69593]	alpha-galactosidase	-	3.2.1.22
[Ref.: #69593]	alpha-glucosidase	+	3.2.1.20
[Ref.: #69593]	alpha-glucosidase	-	3.2.1.20
[Ref.: #69593]	alpha-mannosidase	-	3.2.1.24
[Ref.: #69593]	beta-D-fucosidase	+	3.2.1.38
[Ref.: #69593]	beta-galactosidase	+	3.2.1.23
[Ref.: #69593]	beta-galactosidase	-	3.2.1.23
[Ref.: #69593]	beta-glucosidase	+	3.2.1.21
[Ref.: #69593]	beta-glucuronidase	-	3.2.1.31
[Ref.: #69593]	catalase	+	1.11.1.6
[Ref.: #69593]	cystine arylamidase	-	3.4.11.3
[Ref.: #69593]	cytochrome oxidase	-	1.9.3.1
[Ref.: #69593]	esterase (C 4)	+
[Ref.: #69593]	esterase Lipase (C 8)	+
[Ref.: #69593]	gelatinase	-
[Ref.: #69593]	leucine arylamidase	+	3.4.11.1
[Ref.: #69593]	leucine arylamidase	-	3.4.11.1
[Ref.: #69593]	lipase (C 14)	-
[Ref.: #69593]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #69593]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #69593]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #69593]	trypsin	-	3.4.21.4
[Ref.: #69593]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #69593]

Fatty acid	Percentage
C15:0 anteiso	66.7
C15:0 iso	7.9
C14:0 iso 3OH	6.8
C16:0 iso	4.3
C17:0 anteiso	2.1
C17:0 iso	2.1
C14:0 iso	1.9
C14:0 2OH	1.8
C16:0	1.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil from Fildes Peninsula
[Ref.: #67770]	Country	Antarctica
[Ref.: #67770]	Country ISO 3 Code	ATA
[Ref.: #67770]	Continent	Antarctica

[Ref.: #69593]	Sample type/isolated from	a soil sample collected from Fildes Peninsula, Antarctica.
[Ref.: #69593]	Geographic location (country and/or sea, region)	Fildes Peninsula
[Ref.: #69593]	Country	Antarctica
[Ref.: #69593]	Country ISO 3 Code	ATA
[Ref.: #69593]	Continent	Australia and Oceania
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MH569458 (>99% sequence identity) for Tessaracoccus antarcticus subclade from Microbeatlas

Aquatic Samples	241
Soil Samples	197
Animal Samples	478
Plant Samples	18
Total Samples	934

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Tessaracoccus sp. strain JDX10 16S ribosomal RNA gene, partial sequence	MH569458	1511	ENA	2479848 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Tessaracoccus antarcticus JDX10	GCA_003688855	contig	GenBank	2479848 tax ID
[Ref.: #69593]	genome sequence	REFW00000000		GenBank	2479848 tax ID

[Ref.: #69593]

GC-content

66.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tessaracoccus antarcticus JDX10 NCBI: GCA_003688855.1
[Ref.: #69480]	motile	no	90.851	no
[Ref.: #69480]	flagellated	no	98.223	no
[Ref.: #69480]	gram-positive	yes	87.27	no
[Ref.: #69480]	anaerobic	no	98.809	no
[Ref.: #69480]	aerobic	yes	80.267	no
[Ref.: #69480]	halophile	no	92.68	no
[Ref.: #69480]	spore-forming	no	90.774	no
[Ref.: #69480]	glucose-util	yes	89.062	no
[Ref.: #69480]	thermophile	no	98.736	yes
[Ref.: #69480]	glucose-ferment	no	59.085	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33126, KCTC 49242, MCCC 1H00351

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tessaracoccus antarcticus sp. nov., a rhodopsin-containing bacterium from an Antarctic environment and emended description of the genus Tessaracoccus.	Zhou LY, Zhang JY, Chen XY, Du ZJ, Mu DS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003930	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69593

Liu-Yan Zhou, Jin-Yu Zhang, Xu-Yang Chen, Zong-Jun Du and Da-shuai Mu: Tessaracoccus antarcticus sp. nov., a rhodopsin-containing bacterium from an Antarctic environment and emended description of the genus Tessaracoccus.. IJSEM 70: 2019 ( DOI 10.1099/ijsem.0.003930 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Tessaracoccus antarcticus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF