Name: Niallia taxi M5HDSG1-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164454

Type strain:

Species: Niallia taxi

Strain Designation: M5HDSG1-1

Culture col. no.: JCM 33117, CGMCC 1.13668

Strain history: L. Tuo; Zunyi Med. Univ., China; M5HDSG1-1.

NCBI tax ID(s): 2499688 (species)

Section

Niallia taxi M5HDSG1-1 is an aerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from Surface-sterilized root of Taxus chinensis Rehd. in Guizhou.

colony-forming
Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Niallia*
	Species	**Niallia taxi**
	Full Scientific Name (LPSN)	Niallia taxi (Tuo et al. 2020) Gupta et al. 2020

Synonym

Bacillus taxi

Information on morphological and physiological properties Morphology

[Ref.: #69542]	Gram stain	positive

[Ref.: #69542]	Cell length	1.3-12.5 µm

[Ref.: #69542]	Cell width	0.9-1-6 µm

[Ref.: #69542]	Cell shape	rod-shaped

[Ref.: #69542]	Motility	no

[Ref.: #69542]	Colony color	white, non-pigmented
[Ref.: #69542]	Colony shape	circular
[Ref.: #69542]	Incubation period	7 days
[Ref.: #69542]	Cultivation medium used	Trypticase Soy Agar (TSA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69542]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #69542]

Culture medium growth

		Temperature
[Ref.: #67770]	growth	28 °C
[Ref.: #69542]	growth	10-45 °C
[Ref.: #69542]	optimum	30 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #69542]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #69542]			growth	6.0-12.0
[Ref.: #69542]			growth	7.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69542]

Oxygen tolerance

aerobe

[Ref.: #69542]	Type of spore	endospore
[Ref.: #69542]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69542]		NaCl		growth	0-2	%(w/v)
[Ref.: #69542]		NaCl		optimum	2	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #69542]	Observation	Meso-diaminopimelic acid is the diagnostic diamino acid in the cell-wall peptidoglycan.
[Ref.: #69542]	Observation	MK-7 is the predominant isoprenoid quinone. The major lipids are diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an unidentified aminophospholipid and an unidentified phospholipid.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69542]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #69542]	adipate ChEBI	-	assimilation
[Ref.: #69542]	amygdalin ChEBI	+	builds acid from
[Ref.: #69542]	arbutin ChEBI	-	builds acid from
[Ref.: #69542]	casein	-	hydrolysis
[Ref.: #69542]	cellobiose ChEBI	-	builds acid from
[Ref.: #69542]	citrate ChEBI	-	assimilation
[Ref.: #69542]	D-arabinose ChEBI	-	builds acid from
[Ref.: #69542]	D-arabitol ChEBI	+	builds acid from
[Ref.: #69542]	D-fructose ChEBI	-	builds acid from
[Ref.: #69542]	D-fucose ChEBI	-	builds acid from
[Ref.: #69542]	D-galactose ChEBI	-	builds acid from
[Ref.: #69542]	D-glucose ChEBI	-	assimilation
[Ref.: #69542]	D-glucose ChEBI	-	builds acid from
[Ref.: #69542]	D-lyxose ChEBI	-	builds acid from
[Ref.: #69542]	D-mannitol ChEBI	-	assimilation
[Ref.: #69542]	D-mannose ChEBI	-	assimilation
[Ref.: #69542]	D-mannose ChEBI	+	builds acid from
[Ref.: #69542]	D-ribose ChEBI	+	builds acid from
[Ref.: #69542]	D-tagatose ChEBI	-	builds acid from
[Ref.: #69542]	D-xylose ChEBI	+	builds acid from
[Ref.: #69542]	decanoate ChEBI	-	assimilation
[Ref.: #69542]	erythritol ChEBI	-	builds acid from
[Ref.: #69542]	esculin ChEBI	+	builds acid from
[Ref.: #69542]	galactitol ChEBI	-	builds acid from
[Ref.: #69542]	gelatin ChEBI	+	hydrolysis
[Ref.: #69542]	gentiobiose ChEBI	+	builds acid from
[Ref.: #69542]	gluconate ChEBI	-	builds acid from
[Ref.: #69542]	gluconate ChEBI	+	builds acid from
[Ref.: #69542]	glycogen ChEBI	-	builds acid from
[Ref.: #69542]	glycol ChEBI	+	builds acid from
[Ref.: #69542]	hydrogen sulfide ChEBI	-	assimilation
[Ref.: #69542]	inulin ChEBI	-	builds acid from
[Ref.: #69542]	L-arabinose ChEBI	-	assimilation
[Ref.: #69542]	L-arabinose ChEBI	+	builds acid from
[Ref.: #69542]	L-arabitol ChEBI	-	builds acid from
[Ref.: #69542]	L-fucose ChEBI	-	builds acid from
[Ref.: #69542]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #69542]	L-sorbose ChEBI	-	builds acid from
[Ref.: #69542]	L-xylose ChEBI	-	builds acid from
[Ref.: #69542]	lactose ChEBI	-	builds acid from
[Ref.: #69542]	malate ChEBI	-	assimilation
[Ref.: #69542]	maltose ChEBI	-	assimilation
[Ref.: #69542]	maltose ChEBI	-	builds acid from
[Ref.: #69542]	mannitol ChEBI	+	builds acid from
[Ref.: #69542]	melezitose ChEBI	+	builds acid from
[Ref.: #69542]	melibiose ChEBI	+	builds acid from
[Ref.: #69542]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #69542]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #69542]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #69542]	myo-inositol ChEBI	-	builds acid from
[Ref.: #69542]	N-acetyl-D-glucosamine ChEBI	-	assimilation
[Ref.: #69542]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #69542]	phenylacetate ChEBI	-	assimilation
[Ref.: #69542]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #69542]	potassium gluconate ChEBI	-	assimilation
[Ref.: #69542]	raffinose ChEBI	+	builds acid from
[Ref.: #69542]	ribitol ChEBI	-	builds acid from
[Ref.: #69542]	salicin ChEBI	+	builds acid from
[Ref.: #69542]	sorbitol ChEBI	+	builds acid from
[Ref.: #69542]	starch ChEBI	+	builds acid from
[Ref.: #69542]	starch ChEBI	+	hydrolysis
[Ref.: #69542]	sucrose ChEBI	+	builds acid from
[Ref.: #69542]	trehalose ChEBI	+	builds acid from
[Ref.: #69542]	turanose ChEBI	+	builds acid from
[Ref.: #69542]	tween 20 ChEBI	-	hydrolysis
[Ref.: #69542]	tween 40 ChEBI	-	hydrolysis
[Ref.: #69542]	tween 80 ChEBI	-	hydrolysis
[Ref.: #69542]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #69542]		hydrogen sulfide ChEBI	no

	Physiological tests	Metabolite	Methylred-test
[Ref.: #69542]		hydrogen sulfide ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #69542]	acid phosphatase	+	3.1.3.2
[Ref.: #69542]	alkaline phosphatase	+	3.1.3.1
[Ref.: #69542]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #69542]	alpha-fucosidase	-	3.2.1.51
[Ref.: #69542]	alpha-galactosidase	+	3.2.1.22
[Ref.: #69542]	alpha-glucosidase	+	3.2.1.20
[Ref.: #69542]	alpha-mannosidase	-	3.2.1.24
[Ref.: #69542]	beta-galactosidase	+	3.2.1.23
[Ref.: #69542]	beta-glucosidase	+	3.2.1.21
[Ref.: #69542]	beta-glucuronidase	-	3.2.1.31
[Ref.: #69542]	catalase	+	1.11.1.6
[Ref.: #69542]	cystine arylamidase	-	3.4.11.3
[Ref.: #69542]	cytochrome oxidase	+	1.9.3.1
[Ref.: #69542]	esterase (C 4)	+
[Ref.: #69542]	esterase Lipase (C 8)	+
[Ref.: #69542]	leucine arylamidase	+	3.4.11.1
[Ref.: #69542]	lipase (C 14)	-
[Ref.: #69542]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #69542]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #69542]	trypsin	-	3.4.21.4
[Ref.: #69542]	urease	-	3.5.1.5
[Ref.: #69542]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #69542]

Fatty acid	Percentage
C15:0 anteiso	34.9
C15:0 iso	22.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized root of Taxus chinensis (Pilger) Rehd. in Guizhou
[Ref.: #67770]	Host species	Taxus chinensis
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #69542]	Sample type/isolated from	surface-sterilized root of Taxus chinensis (Pilger) Rehd.
[Ref.: #69542]	Geographic location (country and/or sea, region)	Guizhou
[Ref.: #69542]	Country	China
[Ref.: #69542]	Country ISO 3 Code	CHN
[Ref.: #69542]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacillus sp. (in: Bacteria) strain M5HDSG1-1 16S ribosomal RNA gene, partial sequence	MK355518	1511	ENA	2499688 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Niallia taxi M5HDSG1-1	GCA_004005475	contig	GenBank	2499688 tax ID
[Ref.: #69542]	genome sequence	RZTZ00000000		GenBank	2499688 tax ID

[Ref.: #69542]

GC-content

37.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Niallia taxi M5HDSG1-1 NCBI: GCA_004005475.1
[Ref.: #69480]	motile	yes	90.916	no
[Ref.: #69480]	flagellated	yes	88.106	no
[Ref.: #69480]	gram-positive	yes	93.771	no
[Ref.: #69480]	anaerobic	no	98.349	no
[Ref.: #69480]	aerobic	yes	80.358	no
[Ref.: #69480]	halophile	no	62.15	no
[Ref.: #69480]	spore-forming	yes	94.933	no
[Ref.: #69480]	thermophile	no	99.419	yes
[Ref.: #69480]	glucose-util	yes	89.687	no
[Ref.: #69480]	glucose-ferment	no	78.336	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33117, CGMCC 1.13668

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus taxi sp. nov., a novel endophytic bacterium isolated from root of Taxus chinensis (Pilger) Rehd.	Tuo L, Liu F, Yan XR, Liu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003776	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69542

Li Tuo, Fang Liu, Xiao-Rui Yan and Yun Liu: Bacillus taxi sp. nov., a novel endophytic bacterium isolated from root of Taxus chinensis (Pilger) Rehd. IJSEM 70: 2019 ( DOI 10.1099/ijsem.0.003776 )

* These data were automatically processed and therefore are not curated

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