Streptomyces rapamycinicus AYB-994 | Type strain | DSM 41530, ATCC 29253, IMET 43975, NRRL 5491

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Caption:

Medium 65 28°C

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Information on culture and growth conditions Culture and growth conditions

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

Culture medium growth

Medium recipe at MediaDive

Culture medium link

Culture medium composition

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Medium recipe at MediaDive

Culture medium link

Culture medium composition

Culture medium

ISP 2

Culture medium growth

Culture medium composition

Culture medium

ISP 3

Culture medium growth

Culture medium composition

Culture medium

ISP 4

Culture medium growth

Culture medium composition

Culture medium

ISP 5

Culture medium growth

Culture medium composition

Culture medium

ISP 6

Culture medium growth

Culture medium composition

Culture medium

ISP 7

Culture medium growth

Culture medium composition

What are isolation sources categories?

		Temperature
[Ref.: #10379]	growth	28 °C
[Ref.: #19820]	optimum	28 °C
[Ref.: #32383]	growth	10-37 °C

[Ref.: #10379]	Temperature range	mesophilic
[Ref.: #19820]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32383]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32383]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #10379]	Name of produced compound	rapamycine
[Ref.: #20216]	Name of produced compound	Rapamycin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32383]	esculin ChEBI	+	hydrolysis
[Ref.: #32383]	fructose ChEBI	+	carbon source
[Ref.: #32383]	glucose ChEBI	+	carbon source
[Ref.: #32383]	glycerol ChEBI	+	carbon source
[Ref.: #32383]	maltose ChEBI	+	carbon source
[Ref.: #32383]	mannitol ChEBI	+	carbon source
[Ref.: #32383]	mannose ChEBI	+	carbon source
[Ref.: #32383]	raffinose ChEBI	+	carbon source
[Ref.: #32383]	rhamnose ChEBI	+	carbon source
[Ref.: #32383]	ribose ChEBI	+	carbon source
[Ref.: #32383]	sucrose ChEBI	+	carbon source
[Ref.: #32383]	trehalose ChEBI	+	carbon source
[Ref.: #32383]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #32383]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19820]	635	not determinedn.d.	+	+	+	-	+	+	+	+	+	+	+	+	+	-	-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10379]	Sample type/isolated from	soil
[Ref.: #10379]	Geographic location (country and/or sea, region)	Easter island
[Ref.: #10379]	Country	Fiji
[Ref.: #10379]	Country ISO 3 Code	FJI
[Ref.: #10379]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10379]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19820]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #10379]	Streptomyces rapamycinicus NRRL:5491 16S ribosomal RNA gene, partial sequence	EF408733	1448	ENA	1226757 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces rapamycinicus NRRL 5491	GCA_024298965	complete	GenBank	1343740 tax ID	*
[Ref.: #66792]	Streptomyces rapamycinicus NRRL 5491	GCA_000418455	chromosome	GenBank	1343740 tax ID	*
[Ref.: #66792]	Streptomyces rapamycinicus DSM 41530	GCA_014205315	contig	GenBank	1226757 tax ID	*
[Ref.: #66792]	Streptomyces rapamycinicus NRRL 5491	1343740.8	complete	PATRIC	1343740 tax ID	*
[Ref.: #66792]	Streptomyces rapamycinicus strain DSM 41530	1226757.7	wgs	PATRIC	1226757 tax ID	*
[Ref.: #66792]	Streptomyces rapamycinicus NRRL 5491	2563366593	complete	JGI IMG/M	1343740 tax ID	*

GC-content

71 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces rapamycinicus NRRL 5491 PATRIC: 1343740.8
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces rapamycinicus NRRL 5491 PATRIC: 1343740.8
[Ref.: #69480]	motile	no	92.904	no
[Ref.: #69480]	gram-positive	yes	86.127	no
[Ref.: #69480]	anaerobic	no	99.055	no
[Ref.: #69480]	halophile	no	91.036	no
[Ref.: #69480]	spore-forming	yes	95.447	yes
[Ref.: #69480]	thermophile	no	98.349	yes
[Ref.: #69480]	glucose-util	yes	90.284	yes
[Ref.: #69480]	aerobic	yes	93.351	no
[Ref.: #69480]	flagellated	no	97.93	no
[Ref.: #69480]	glucose-ferment	no	89.868	no

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