Name: Halostella pelagica JCM 32956
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164424

Type strain:

Species: Halostella pelagica

Culture col. no.: JCM 32956, CGMCC 1.13608

Strain history: H.-L. Cui; Jiangsu Univ., China; LYG-109.

NCBI tax ID(s): 2583824 (species)

Other strains from Halostella pelagica

H. pelagica JCM 32954, CGMCC 1.13603 (type strain)

Section

Halostella pelagica JCM 32956 is a mesophilic archaeon that was isolated from Brine sample of commercial salted Laminaria produced in Lianyungang.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halostella*
	Species	**Halostella pelagica**
	Full Scientific Name (LPSN)	Halostella pelagica Han and Cui 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8, MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Brine sample of commercial salted Laminaria produced in Lianyungang
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jiangsu Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MN480561 (>99% sequence identity) for Halostella pelagica subclade from Microbeatlas

Aquatic Samples	1
Soil Samples	4
Animal Samples
Plant Samples
Total Samples	5

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halostella sp. strain LYG-109 16S ribosomal RNA gene, partial sequence	MH064336	1471	ENA	2583824 tax ID
[Ref.: #67770]	Halostella sp. strain LYG-109 16S ribosomal RNA gene, partial sequence	MN480561	1471	ENA	2583824 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halostella pelagica LYG-109	GCA_004762015	contig	GenBank	2583824 tax ID

[Ref.: #67770]

GC-content

63.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halostella pelagica LYG-109 NCBI: GCA_004762015.1
[Ref.: #69480]	flagellated	no	97.133	no
[Ref.: #69480]	gram-positive	no	96.858	no
[Ref.: #69480]	anaerobic	no	96.541	no
[Ref.: #69480]	aerobic	yes	89.396	no
[Ref.: #69480]	halophile	yes	84.605	no
[Ref.: #69480]	spore-forming	no	93.873	no
[Ref.: #69480]	thermophile	no	82.437	yes
[Ref.: #69480]	glucose-util	yes	88.365	no
[Ref.: #69480]	motile	no	79.791	no
[Ref.: #69480]	glucose-ferment	no	85.908	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32956, CGMCC 1.13608

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Halostella pelagica LYG-109

Change proposal

Change proposal