Name: Halostella litorea JCM 32955
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164423

Type strain:

Species: Halostella litorea

Culture col. no.: JCM 32955, CGMCC 1.13610

Strain history: H.-L. Cui; Jiangsu Univ., China; DLLS-108.

NCBI tax ID(s): 2528831 (species)

Section

Halostella litorea JCM 32955 is a mesophilic, Gram-negative archaeon that was isolated from Brine sample of commercial salted Laminaria produced in Dalian.

Gram-negative
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halostella*
	Species	**Halostella litorea**
	Full Scientific Name (LPSN)	Halostella litorea Han and Cui 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.981

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.97

[Ref.: #67770]

Observation

quinones: MK-8, MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Brine sample of commercial salted Laminaria produced in Dalian
[Ref.: #67770]	Geographic location (country and/or sea, region)	Liaoning Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halostella sp. strain DLLS-108 16S ribosomal RNA gene, partial sequence	MH062944	1471	ENA	2528831 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halostella litorea DLLS-108	GCA_004785955	scaffold	GenBank	2528831 tax ID

[Ref.: #67770]

GC-content

68.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halostella litorea DLLS-108 NCBI: GCA_004785955.1
[Ref.: #69481]	spore-forming	no	82	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halostella litorea DLLS-108 NCBI: GCA_004785955.1
[Ref.: #69480]	motile	no	65.936	no
[Ref.: #69480]	flagellated	no	95.964	no
[Ref.: #69480]	gram-positive	no	97.329	no
[Ref.: #69480]	anaerobic	no	95.327	no
[Ref.: #69480]	aerobic	yes	87.374	no
[Ref.: #69480]	halophile	yes	88.927	no
[Ref.: #69480]	spore-forming	no	95.451	no
[Ref.: #69480]	glucose-util	yes	91.609	no
[Ref.: #69480]	thermophile	no	83.174	yes
[Ref.: #69480]	glucose-ferment	no	82.938	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32955, CGMCC 1.13610

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halostella pelagica sp. nov. and Halostella litorea sp. nov., isolated from salted brown alga Laminaria.	Han D, Cui HL	Int J Syst Evol Microbiol	10.1099/ijsem.0.004003	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Halostella litorea DLLS-108

Halostella litorea DLLS-108

Change proposal

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