Nonomuraea mesophila (CGMCC 4.7541, JCM 32916, 6K102)

Name: Nonomuraea mesophila (CGMCC 4.7541, JCM 32916, 6K102)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164415

Type strain

Strain Designation 6K102

Culture col. no. CGMCC 4.7541 JCM 32916 6K102 DSM 119041

NCBI tax ID(s) 2530382

Special Collections JCM Literature strains

History N. Sahin; Ondokuz Mayis Univ., Turkey; 6K102. <- JCM; JCM 32916

Links

Nonomuraea mesophila 6K102 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from Desert soil from the Karakum Desert.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 285561

DSM 119041,JCM 32916

@ref 20215

Last LPSN update 2026-02-09 11:39:50

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Nonomuraea

Species Nonomuraea mesophila

Full scientific name Nonomuraea mesophila Saygin et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.8
69554	positive

Multimedia

@ref:	126131
multimedia content:	DSM_119041.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_119041.jpg
caption:	M.65, 28°C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
126131	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
126131	YEAST STARCH AGAR (A) (DSMZ Medium 1027)		Medium recipe at MediaDive	Name: YEAST STARCH AGAR (A) (DSMZ Medium 1027) Composition: Agar 15.0 g/l Starch 10.0 g/l Yeast extract 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28
69554	positive	growth	20-37
69554	positive	optimum	28
126131	positive	growth	28

Culture pH

@ref	Ability	Type	PH
69554	positive	optimum	7
69554	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
69554	aerobe
125439	obligate aerobe	99.2

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
125438				90.32
69554	Aerial hyphae differentiated into long straight spore chains with a smooth surfaces.	spore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69554	NaCl	positive	growth	0-5 %(w/v)

Observation

@ref	Observation
67770	quinones: MK-9(H₄), MK-9(H₆)
69554	The polar lipid profile include diphosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidylethanolamine, hydroxy-phosphatidylethanolamine, dihydroxy phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, two unidentified aminophospholipids, an unidentified glycophospholipid, four unidentified phospholipids and an unidentified lipid.
69554	Whole-cell hydrolysates include meso-A 2pm, glucose, mannose, madurose and ribose.
69554	Good growth occurs on ISP 2, ISP 4 agar, modified Bennett's agar, tryptic soy agar and nutrient agar and moderately well on Czapek's, ISP 3, 5, 6 and 7 agar. Substrate mycelia produce a range of pigments (cream, brown, reddish black or claret red). Melanoid pigments are not produced on ISP6 agar. Red or light pink diffusible pigments are produced on ISP 2, ISP 3 and modified Bennett's agar.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69554	18240 ChEBI	4-hydroxy-L-proline	+	nitrogen source
69554	16708 ChEBI	adenine	-	degradation
69554	15676 ChEBI	allantoin	-	hydrolysis
69554	18305 ChEBI	arbutin	+	hydrolysis
69554		casein	-	degradation
69554	17057 ChEBI	cellobiose	+	carbon source
69554	17057 ChEBI	cellobiose	+	energy source
69554	17029 ChEBI	chitin	-	degradation
69554	17108 ChEBI	D-arabinose	+	carbon source
69554	17108 ChEBI	D-arabinose	+	energy source
69554	15824 ChEBI	D-fructose	+	carbon source
69554	15824 ChEBI	D-fructose	+	energy source
69554	12936 ChEBI	D-galactose	+	carbon source
69554	12936 ChEBI	D-galactose	+	energy source
69554	17634 ChEBI	D-glucose	+	carbon source
69554	17634 ChEBI	D-glucose	+	energy source
69554	16899 ChEBI	D-mannitol	+	carbon source
69554	16899 ChEBI	D-mannitol	+	energy source
69554	16024 ChEBI	D-mannose	-	carbon source
69554	16024 ChEBI	D-mannose	-	energy source
69554	17924 ChEBI	D-sorbitol	-	carbon source
69554	17924 ChEBI	D-sorbitol	-	energy source
69554	17924 ChEBI	D-sorbitol	+	carbon source
69554	17924 ChEBI	D-sorbitol	+	energy source
69554	52071 ChEBI	dextran	+	carbon source
69554	52071 ChEBI	dextran	+	energy source
69554	23652 ChEBI	dextrin	-	carbon source
69554	23652 ChEBI	dextrin	-	energy source
69554	4853 ChEBI	esculin	+	hydrolysis
69554	5291 ChEBI	gelatin	-	degradation
69554	15428 ChEBI	glycine	+	nitrogen source
69554	16235 ChEBI	guanine	-	degradation
69554	16136 ChEBI	hydrogen sulfide	-
69554	17368 ChEBI	hypoxanthine	+	degradation
69554	15443 ChEBI	inulin	+	carbon source
69554	15443 ChEBI	inulin	+	energy source
69554	16977 ChEBI	L-alanine	+	nitrogen source
69554	30849 ChEBI	L-arabinose	-	carbon source
69554	30849 ChEBI	L-arabinose	-	energy source
69554	16467 ChEBI	L-arginine	+	nitrogen source
69554	17196 ChEBI	L-asparagine	+	nitrogen source
69554	17561 ChEBI	L-cysteine	+	nitrogen source
69554	18050 ChEBI	L-glutamine	-	carbon source
69554	18050 ChEBI	L-glutamine	-	energy source
69554	15971 ChEBI	L-histidine	-	nitrogen source
69554	16643 ChEBI	L-methionine	+	nitrogen source
69554	17203 ChEBI	L-proline	+	nitrogen source
69554	62345 ChEBI	L-rhamnose	-	carbon source
69554	62345 ChEBI	L-rhamnose	-	energy source
69554	17115 ChEBI	L-serine	+	nitrogen source
69554	17266 ChEBI	L-sorbose	-	carbon source
69554	17266 ChEBI	L-sorbose	-	energy source
69554	17895 ChEBI	L-tyrosine	+	nitrogen source
69554	16414 ChEBI	L-valine	+	nitrogen source
69554	17716 ChEBI	lactose	+	carbon source
69554	17716 ChEBI	lactose	+	energy source
69554	17306 ChEBI	maltose	+	carbon source
69554	17306 ChEBI	maltose	+	energy source
69554	6731 ChEBI	melezitose	+	carbon source
69554	6731 ChEBI	melezitose	+	energy source
69554	28053 ChEBI	melibiose	+	carbon source
69554	28053 ChEBI	melibiose	+	energy source
69554	17268 ChEBI	myo-inositol	-	carbon source
69554	17268 ChEBI	myo-inositol	-	energy source
69554	90730 ChEBI	N-glutaryl-L-phenylalanine 2-naphthylamide	+	nitrogen source
69554	17632 ChEBI	nitrate	+	reduction
69554	16634 ChEBI	raffinose	+	carbon source
69554	16634 ChEBI	raffinose	+	energy source
69554	15963 ChEBI	ribitol	+	carbon source
69554	15963 ChEBI	ribitol	+	energy source
69554	63675 ChEBI	sodium succinate	-	carbon source
69554	63675 ChEBI	sodium succinate	-	energy source
69554	28017 ChEBI	starch	+	degradation
69554	17992 ChEBI	sucrose	+	carbon source
69554	17992 ChEBI	sucrose	+	energy source
69554	53424 ChEBI	tween 20	+	degradation
69554	53423 ChEBI	tween 40	-	degradation
69554	53426 ChEBI	tween 80	-	degradation
69554	16199 ChEBI	urea	+	hydrolysis
69554	15318 ChEBI	xanthine	-	degradation
69554	17151 ChEBI	xylitol	-	carbon source
69554	17151 ChEBI	xylitol	-	energy source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
69554	16136 ChEBI	hydrogen sulfide

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Desert soil from the Karakum Desert		Turkmenistan	TKM	Asia
69554	desert soil sample collected from the Karakum Desert, Turkmenistan.	Karakum Desert	Turkmenistan	TKM	Asia
126131	Desert soil	Karakum Desert	Turkmenistan	TKM	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
67770	ASM435280v1 assembly for Nonomuraea mesophila 6K102	contig	GCA_004352805	2530382.3	2866877934	2530382

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Nonomuraea mesophila strain 6K102 16S ribosomal RNA gene, partial sequence	MG770753	1484		2530382

GC content

@ref	GC-content (mol%)	Method
67770	70.8	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nonomuraea mesophila 6K102
NCBI: GCA_004352805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	73.90	no
125439	motility	BacteriaNetⓘ	no	88.30	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nonomuraea mesophila 6K102
NCBI: GCA_004352805.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.31	no
125438	anaerobic	anaerobicⓘ	no	93.05	yes
125438	aerobic	aerobicⓘ	yes	85.00	yes
125438	spore-forming	spore-formingⓘ	yes	90.32	no
125438	thermophilic	thermophileⓘ	no	95.49	yes
125438	flagellated	motile2+ⓘ	no	85.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov.	Saygin H, Nouioui I, Ay H, Guven K, Cetin D, Klenk HP, Goodfellow M, Sahin N	Int J Syst Evol Microbiol	10.1099/ijsem.0.003808	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69554	Hayrettin Saygin, Imen Nouioui, Hilal Ay, Kiymet Guven, Demet Cetin, Hans-Peter Klen2, Michael Goodfellow and Nevzat Sahin: Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov.. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003808 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126131	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 119041
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nonomuraea mesophila (CGMCC 4.7541, JCM 32916, 6K102)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004352805

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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