Name: Nonomuraea mesophila 6K102
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164415

Type strain:

Species: Nonomuraea mesophila

Strain Designation: 6K102

Culture col. no.: JCM 32916, CGMCC 4.7541

Strain history: N. Sahin; Ondokuz Mayis Univ., Turkey; 6K102.

NCBI tax ID(s): 2530382 (species)

Special Collections

Section

Nonomuraea mesophila 6K102 is an aerobe, spore-forming, mesophilic bacterium that was isolated from Desert soil from the Karakum Desert.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Nonomuraea*
	Species	**Nonomuraea mesophila**
	Full Scientific Name (LPSN)	Nonomuraea mesophila Saygin et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69554]	Gram stain	positive

[Ref.: #69554]	Motility	no

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	28 °C
[Ref.: #69554]	growth	20-37 °C
[Ref.: #69554]	optimum	28 °C

	pH	Kind of pH		pH
[Ref.: #69554]			optimum	7
[Ref.: #69554]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69554]

Oxygen tolerance

aerobe

[Ref.: #69554]	Spore description	Aerial hyphae differentiated into long straight spore chains with a smooth surfaces.
[Ref.: #69554]	Type of spore	spore
[Ref.: #69554]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %90.32

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69554]		NaCl		growth	0-5	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₆)
[Ref.: #69554]	Observation	The polar lipid profile include diphosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidylethanolamine, hydroxy-phosphatidylethanolamine, dihydroxy phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, two unidentified aminophospholipids, an unidentified glycophospholipid, four unidentified phospholipids and an unidentified lipid.
[Ref.: #69554]	Observation	Whole-cell hydrolysates include meso-A 2pm, glucose, mannose, madurose and ribose.
[Ref.: #69554]	Observation	Good growth occurs on ISP 2, ISP 4 agar, modified Bennett's agar, tryptic soy agar and nutrient agar and moderately well on Czapek's, ISP 3, 5, 6 and 7 agar. Substrate mycelia produce a range of pigments (cream, brown, reddish black or claret red). Melanoid pigments are not produced on ISP6 agar. Red or light pink diffusible pigments are produced on ISP 2, ISP 3 and modified Bennett's agar.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69554]	4-hydroxy-L-proline ChEBI	+	nitrogen source
[Ref.: #69554]	adenine ChEBI	-	degradation
[Ref.: #69554]	allantoin ChEBI	-	hydrolysis
[Ref.: #69554]	arbutin ChEBI	+	hydrolysis
[Ref.: #69554]	casein	-	degradation
[Ref.: #69554]	cellobiose ChEBI	+	carbon source
[Ref.: #69554]	cellobiose ChEBI	+	energy source
[Ref.: #69554]	chitin ChEBI	-	degradation
[Ref.: #69554]	D-arabinose ChEBI	+	carbon source
[Ref.: #69554]	D-arabinose ChEBI	+	energy source
[Ref.: #69554]	D-fructose ChEBI	+	carbon source
[Ref.: #69554]	D-fructose ChEBI	+	energy source
[Ref.: #69554]	D-galactose ChEBI	+	carbon source
[Ref.: #69554]	D-galactose ChEBI	+	energy source
[Ref.: #69554]	D-glucose ChEBI	+	carbon source
[Ref.: #69554]	D-glucose ChEBI	+	energy source
[Ref.: #69554]	D-mannitol ChEBI	+	carbon source
[Ref.: #69554]	D-mannitol ChEBI	+	energy source
[Ref.: #69554]	D-mannose ChEBI	-	carbon source
[Ref.: #69554]	D-mannose ChEBI	-	energy source
[Ref.: #69554]	D-sorbitol ChEBI	-	carbon source
[Ref.: #69554]	D-sorbitol ChEBI	-	energy source
[Ref.: #69554]	D-sorbitol ChEBI	+	carbon source
[Ref.: #69554]	D-sorbitol ChEBI	+	energy source
[Ref.: #69554]	dextran ChEBI	+	carbon source
[Ref.: #69554]	dextran ChEBI	+	energy source
[Ref.: #69554]	dextrin ChEBI	-	carbon source
[Ref.: #69554]	dextrin ChEBI	-	energy source
[Ref.: #69554]	esculin ChEBI	+	hydrolysis
[Ref.: #69554]	gelatin ChEBI	-	degradation
[Ref.: #69554]	glycine ChEBI	+	nitrogen source
[Ref.: #69554]	guanine ChEBI	-	degradation
[Ref.: #69554]	hydrogen sulfide ChEBI	-
[Ref.: #69554]	hypoxanthine ChEBI	+	degradation
[Ref.: #69554]	inulin ChEBI	+	carbon source
[Ref.: #69554]	inulin ChEBI	+	energy source
[Ref.: #69554]	L-alanine ChEBI	+	nitrogen source
[Ref.: #69554]	L-arabinose ChEBI	-	carbon source
[Ref.: #69554]	L-arabinose ChEBI	-	energy source
[Ref.: #69554]	L-arginine ChEBI	+	nitrogen source
[Ref.: #69554]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #69554]	L-cysteine ChEBI	+	nitrogen source
[Ref.: #69554]	L-glutamine ChEBI	-	carbon source
[Ref.: #69554]	L-glutamine ChEBI	-	energy source
[Ref.: #69554]	L-histidine ChEBI	-	nitrogen source
[Ref.: #69554]	L-methionine ChEBI	+	nitrogen source
[Ref.: #69554]	L-proline ChEBI	+	nitrogen source
[Ref.: #69554]	L-rhamnose ChEBI	-	carbon source
[Ref.: #69554]	L-rhamnose ChEBI	-	energy source
[Ref.: #69554]	L-serine ChEBI	+	nitrogen source
[Ref.: #69554]	L-sorbose ChEBI	-	carbon source
[Ref.: #69554]	L-sorbose ChEBI	-	energy source
[Ref.: #69554]	L-tyrosine ChEBI	+	nitrogen source
[Ref.: #69554]	L-valine ChEBI	+	nitrogen source
[Ref.: #69554]	lactose ChEBI	+	carbon source
[Ref.: #69554]	lactose ChEBI	+	energy source
[Ref.: #69554]	maltose ChEBI	+	carbon source
[Ref.: #69554]	maltose ChEBI	+	energy source
[Ref.: #69554]	melezitose ChEBI	+	carbon source
[Ref.: #69554]	melezitose ChEBI	+	energy source
[Ref.: #69554]	melibiose ChEBI	+	carbon source
[Ref.: #69554]	melibiose ChEBI	+	energy source
[Ref.: #69554]	myo-inositol ChEBI	-	carbon source
[Ref.: #69554]	myo-inositol ChEBI	-	energy source
[Ref.: #69554]	N-glutaryl-L-phenylalanine 2-naphthylamide ChEBI	+	nitrogen source
[Ref.: #69554]	nitrate ChEBI	+	reduction
[Ref.: #69554]	raffinose ChEBI	+	carbon source
[Ref.: #69554]	raffinose ChEBI	+	energy source
[Ref.: #69554]	ribitol ChEBI	+	carbon source
[Ref.: #69554]	ribitol ChEBI	+	energy source
[Ref.: #69554]	sodium succinate ChEBI	-	carbon source
[Ref.: #69554]	sodium succinate ChEBI	-	energy source
[Ref.: #69554]	starch ChEBI	+	degradation
[Ref.: #69554]	sucrose ChEBI	+	carbon source
[Ref.: #69554]	sucrose ChEBI	+	energy source
[Ref.: #69554]	tween 20 ChEBI	+	degradation
[Ref.: #69554]	tween 40 ChEBI	-	degradation
[Ref.: #69554]	tween 80 ChEBI	-	degradation
[Ref.: #69554]	urea ChEBI	+	hydrolysis
[Ref.: #69554]	xanthine ChEBI	-	degradation
[Ref.: #69554]	xylitol ChEBI	-	carbon source
[Ref.: #69554]	xylitol ChEBI	-	energy source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #69554]		hydrogen sulfide ChEBI	no

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Desert soil from the Karakum Desert
[Ref.: #67770]	Country	Turkmenistan
[Ref.: #67770]	Country ISO 3 Code	TKM
[Ref.: #67770]	Continent	Asia

[Ref.: #69554]	Sample type/isolated from	desert soil sample collected from the Karakum Desert, Turkmenistan.
[Ref.: #69554]	Geographic location (country and/or sea, region)	Karakum Desert
[Ref.: #69554]	Country	Turkmenistan
[Ref.: #69554]	Country ISO 3 Code	TKM
[Ref.: #69554]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nonomuraea mesophila strain 6K102 16S ribosomal RNA gene, partial sequence	MG770753	1484	GenBank ENA	2530382 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nonomuraea mesophila 6K102	GCA_004352805	contig	GenBank ENA	2530382 tax ID
[Ref.: #69554]	genome sequence	SMLD00000000		GenBank ENA	2530382 tax ID

[Ref.: #67770]

GC-content

70.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nonomuraea mesophila 6K102 NCBI: GCA_004352805.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.312	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.053	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.001	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	90.32	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.488	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32916, CGMCC 4.7541

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov.	Saygin H, Nouioui I, Ay H, Guven K, Cetin D, Klenk HP, Goodfellow M, Sahin N	Int J Syst Evol Microbiol	10.1099/ijsem.0.003808	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69554

Hayrettin Saygin, Imen Nouioui, Hilal Ay, Kiymet Guven, Demet Cetin, Hans-Peter Klen2, Michael Goodfellow and Nevzat Sahin: Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov.. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003808 )

* These data were automatically processed and therefore are not curated

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