Kribbella turkmenica (KCTC 49224, JCM 32914, 16K104)

Name: Kribbella turkmenica (KCTC 49224, JCM 32914, 16K104)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164414

Type strain

Strain Designation 16K104

Culture col. no. KCTC 49224 JCM 32914 16K104

NCBI tax ID(s) 2530375

Special Collections JCM KCTC Literature strains

Links

Kribbella turkmenica 16K104 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from Desert soil from the Karakum Desert.

Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 24897

KCTC 49224,JCM 32914

@ref 20215

Last LPSN update 2025-12-16 10:09:27

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Kribbellaceae

Genus Kribbella

Species Kribbella turkmenica

Full scientific name Kribbella turkmenica Saygin et al. 2019

Morphology

Cell morphology

68002

Gram stainpositive

Pigmentation

@ref	Production	Name
68002		diffusible pigments
68002		melanoid pigments

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	28	mesophilic
68002	positive	growth	20-37
68002	positive	optimum	28	mesophilic

Culture pH

@ref	Ability	Type	PH
68002	positive	optimum	7
68002	positive	growth	5.0-10.0

Physiology and metabolism

Oxygen tolerance

68002

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68002	NaCl	positive	growth	0.0-6.0 %(w/v)

Observation

@ref	Observation
67770	quinones: MK-9(H₄), MK-9(H₂), MK-8(H₄)
68002	extensively branched substrate and aerial mycelia which fragment into rod-shaped elements
68002	Substrate mycelia are observed to be in the cream to brown colour series on all tested media
68002	The polar lipids profile includes diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, phosphatidylinositol, seven unidentified phospholipids and four unidentified lipids
68002	The major menaquinones are MK-9(H4), MK-9(H2) and MK-8(H4)
68002	The whole-cell sugars are ribose and glucose

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68002	16708 ChEBI	adenine	+	degradation
68002	15676 ChEBI	allantoin	+	hydrolysis
68002	18305 ChEBI	arbutin	+	hydrolysis
68002		casein	+	degradation
68002	17057 ChEBI	cellobiose	+	carbon source
68002	17057 ChEBI	cellobiose	+	energy source
68002	17029 ChEBI	chitin	-	degradation
68002	17108 ChEBI	D-arabinose	+	carbon source
68002	17108 ChEBI	D-arabinose	+	energy source
68002	15824 ChEBI	D-fructose	+	carbon source
68002	15824 ChEBI	D-fructose	+	energy source
68002	12936 ChEBI	D-galactose	+	carbon source
68002	12936 ChEBI	D-galactose	+	energy source
68002	16024 ChEBI	D-mannose	+	carbon source
68002	16024 ChEBI	D-mannose	+	energy source
68002	17924 ChEBI	D-sorbitol	-	energy source
68002	17924 ChEBI	D-sorbitol	-	carbon source
68002	52071 ChEBI	dextran	+	carbon source
68002	52071 ChEBI	dextran	+	energy source
68002	4853 ChEBI	esculin	+	hydrolysis
68002	495056 ChEBI	gamma-cyclodextrin	+	carbon source
68002	495056 ChEBI	gamma-cyclodextrin	+	energy source
68002	5291 ChEBI	gelatin	+	degradation
68002	17234 ChEBI	glucose	+	carbon source
68002	17234 ChEBI	glucose	+	energy source
68002	15428 ChEBI	glycine	+	nitrogen source
68002	16235 ChEBI	guanine	+	degradation
68002		hydroxy-L-proline	+	nitrogen source
68002	17368 ChEBI	hypoxanthine	+	degradation
68002	15443 ChEBI	inulin	-	energy source
68002	15443 ChEBI	inulin	-	carbon source
68002	24898 ChEBI	isoleucine	-	nitrogen source
68002		L-alanine 4-nitroanilide	+	nitrogen source
68002	30849 ChEBI	L-arabinose	+	carbon source
68002	30849 ChEBI	L-arabinose	+	energy source
68002	16467 ChEBI	L-arginine	+	nitrogen source
68002	17196 ChEBI	L-asparagine	+	nitrogen source
68002	17561 ChEBI	L-cysteine	+	nitrogen source
68002	18050 ChEBI	L-glutamine	-	energy source
68002	18050 ChEBI	L-glutamine	-	carbon source
68002	15971 ChEBI	L-histidine	+	nitrogen source
68002	16643 ChEBI	L-methionine	-	nitrogen source
68002	17203 ChEBI	L-proline	+	nitrogen source
68002	62345 ChEBI	L-rhamnose	+	carbon source
68002	62345 ChEBI	L-rhamnose	+	energy source
68002	17115 ChEBI	L-serine	+	nitrogen source
68002	17266 ChEBI	L-sorbose	-	energy source
68002	17266 ChEBI	L-sorbose	-	carbon source
68002	17895 ChEBI	L-tyrosine	+	nitrogen source
68002	16414 ChEBI	L-valine	+	nitrogen source
68002	17716 ChEBI	lactose	+	carbon source
68002	17716 ChEBI	lactose	+	energy source
68002	17306 ChEBI	maltose	+	carbon source
68002	17306 ChEBI	maltose	+	energy source
68002	29864 ChEBI	mannitol	-	energy source
68002	29864 ChEBI	mannitol	-	carbon source
68002	6731 ChEBI	melezitose	+	carbon source
68002	6731 ChEBI	melezitose	+	energy source
68002	28053 ChEBI	melibiose	+	carbon source
68002	28053 ChEBI	melibiose	+	energy source
68002	17268 ChEBI	myo-inositol	+	carbon source
68002	17268 ChEBI	myo-inositol	+	energy source
68002	90730 ChEBI	N-glutaryl-L-phenylalanine 2-naphthylamide	+	nitrogen source
68002	17632 ChEBI	nitrate	-	reduction
68002	16634 ChEBI	raffinose	+	carbon source
68002	16634 ChEBI	raffinose	+	energy source
68002	15963 ChEBI	ribitol	+	carbon source
68002	15963 ChEBI	ribitol	+	energy source
68002	28017 ChEBI	starch	-	degradation
68002	30031 ChEBI	succinate	-	energy source
68002	30031 ChEBI	succinate	-	carbon source
68002	17992 ChEBI	sucrose	+	carbon source
68002	17992 ChEBI	sucrose	+	energy source
68002	53424 ChEBI	tween 20	-	degradation
68002	53423 ChEBI	tween 40	+	degradation
68002	53426 ChEBI	tween 80	+	degradation
68002	16199 ChEBI	urea	-	hydrolysis
68002	15318 ChEBI	xanthine	-	degradation
68002	37166 ChEBI	xylan	+	degradation
68002	17151 ChEBI	xylitol	-	energy source
68002	17151 ChEBI	xylitol	-	carbon source
68002	18222 ChEBI	xylose	+	carbon source
68002	18222 ChEBI	xylose	+	energy source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68002	16136 ChEBI	hydrogen sulfide

Fatty acid profile

Metadata FA analysis

@ref

68002

Fatty acid	Percentage
C16:0 iso	20.3
C15:0 iso	18.8
C15:0 anteiso	18.3
C17:0 iso	10.9
C16:0 9-methyl	7.3
C16:0 10-ME	5.7
C17:0 anteiso	5.1
C14:0 iso	4.5
C17:0	1.6
C16:0 iso 2OH	1.3
C16:0	1.2
C16:0 anteiso	1.1

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Desert soil from the Karakum Desert	Turkmenistan	TKM	Asia
68002	desert soil sample, which had a low organic matter content	Turkmenistan	TKM	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
68002	ASM434872v1 assembly for Kribbella turkmenica 16K104	contig	GCA_004348725	2530375.3	2866793835	2530375	5.26

Genome browser: GCA_004348725

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Kribbella turkmenica strain 16K104 16S ribosomal RNA gene, partial sequence	MG770857	1480		1871183

GC content

@ref	GC-content (mol%)	Method
68002	69.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kribbella turkmenica 16K104
NCBI: GCA_004348725.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.68	no
125438	anaerobic	anaerobicⓘ	no	96.46	no
125438	aerobic	aerobicⓘ	yes	89.23	yes
125438	spore-forming	spore-formingⓘ	yes	77.45	no
125438	thermophilic	thermophileⓘ	no	96.98	yes
125438	flagellated	motile2+ⓘ	no	87.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kribbella turkmenica sp. nov., isolated from the Karakum Desert.	Saygin H, Ay H, Guven K, Sahin N	Int J Syst Evol Microbiol	10.1099/ijsem.0.003538	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68002	Hayrettin Saygin, Hilal, Kiymet Guven, Nevzat Sahin: Kribbella turkmenica sp. nov., isolated from the Karakum Desert. IJSEM 69: 2533 - 2540 2019 ( DOI 10.1099/ijsem.0.003538 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kribbella turkmenica (KCTC 49224, JCM 32914, 16K104)

Name and taxonomic classification