Streptomyces cadmiisoli (CICC 11050, JCM 32897, ZFG47)

Name: Streptomyces cadmiisoli (CICC 11050, JCM 32897, ZFG47)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164410

Type strain

Strain Designation ZFG47

Culture col. no. CICC 11050 JCM 32897 ZFG47

NCBI tax ID(s) 2184053

Special Collections JCM Literature strains

History JCM <-- K. Li; Sch. of Life Sci., Hunan Univ. of Sci. & Technol., China; ZFG47.

Links

Streptomyces cadmiisoli ZFG47 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from Cadmium-contaminated soil in Xiangtan City.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 393579

JCM 32897

@ref 20215

Last LPSN update 2026-05-29 08:45:24

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces cadmiisoli

Full scientific name Streptomyces cadmiisoli Li et al. 2019

Morphology

Cell morphology

@ref	Confidence	Gram stain
67837		positive
125439	93.384
125439	98.55	positive
125438	92.386	positive

Multicellular morphology

@ref	Forms multicellular complex	Complex color	Medium name	Further description
67837		aerial mycelium was white to grey, substrate mycelium was colourless to yellow	ISP2, ISP3,ISP4, ISP5, ISP7	well-developed branched substrate hyphae. At maturity, vegetative hyphae form long, flexuous spiral spore chains consisting of ellipsoid spores with spiny surfaces

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28
67837	positive	growth	15-40
67837	positive	optimum	28

Culture pH

@ref	Ability	Type	PH	PH range
67837	positive	optimum	7
67837	positive	growth	5-10	alkaliphile
67837		growth	11
67837		growth	4

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67837	aerobe
125439	obligate aerobe	97.932
125438	aerobe	92.312

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
67837	long, flexuous spiral spore chains consisting of ellipsoid spores with spiny surfaces.	spore
125438				91.01

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67837	NaCl	positive	growth	0-12 %(w/v)

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₈), MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67837	29016 ChEBI	arginine	+	nitrogen source
67837	22653 ChEBI	asparagine	+	nitrogen source
67837	15824 ChEBI	D-fructose	+	carbon source
67837	12936 ChEBI	D-galactose	+	carbon source
67837	17634 ChEBI	D-glucose	+	carbon source
67837	16899 ChEBI	D-mannitol	-	carbon source
67837	65327 ChEBI	D-xylose	-	carbon source
67837	4853 ChEBI	esculin	+	hydrolysis
67837	5291 ChEBI	gelatin	-	hydrolysis
67837	30849 ChEBI	L-arabinose	+	carbon source
67837	17561 ChEBI	L-cysteine	+	nitrogen source
67837	15971 ChEBI	L-histidine	+	nitrogen source
67837	62345 ChEBI	L-rhamnose	+	carbon source
67837	16857 ChEBI	L-threonine	+	nitrogen source
67837	16414 ChEBI	L-valine	+	nitrogen source
67837	16811 ChEBI	methionine	+	nitrogen source
67837		milk	+	assimilation
67837	17632 ChEBI	nitrate	-	reduction
67837	16634 ChEBI	raffinose	+	carbon source
67837	28017 ChEBI	starch	+	hydrolysis
67837	17992 ChEBI	sucrose	+	carbon source
67837	27082 ChEBI	trehalose	+	carbon source
67837	53424 ChEBI	tween 20	+	hydrolysis
67837	53423 ChEBI	tween 40	+	hydrolysis
67837	53426 ChEBI	tween 80	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67837	16136 ChEBI	hydrogen sulfide
67837	89634 ChEBI	melanin

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67770	Cadmium-contaminated soil in Xiangtan City	Hunan Province, South Central China	China	CHN	Asia
67837	cadmium-contaminated soil	Xiangtan City, Hunan Province	China	CHN	Asia	27.9	112.967 27.9/112.967

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM326105v1 assembly for Streptomyces cadmiisoli ZFG47	complete	GCA_003261055	2184053.3	2875367630	2184053	98.07

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67837	Streptomyces cadmiisoli 16S ribosomal RNA gene, partial sequence	MH300129	1395		2184053

GC content

@ref	GC-content (mol%)	Method
67837	70.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM326105v1 assembly for Streptomyces cadmiisoli ZFG47
NCBI: GCA_003261055

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.93	no
125439	motility	BacteriaNetⓘ	no	93.38	no
125439	gram_stain	BacteriaNetⓘ	positive	98.55	no
125439	spore_formation	BacteriaNetⓘ	yes	83.23	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces cadmiisoli ZFG47
NCBI: GCA_003261055.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.39	yes
125438	anaerobic	anaerobicⓘ	no	97.36	no
125438	aerobic	aerobicⓘ	yes	92.31	no
125438	spore-forming	spore-formingⓘ	yes	91.01	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	no	86.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces coryli sp. nov., isolated from hazelnut orchard soil.	Saygin H, Veyisoglu A, Tatar D, Nigiz C, Tokatli A, Sahin N	Int J Syst Evol Microbiol	10.1099/ijsem.0.004347	2020
Phylogeny	Streptomyces cadmiisoli sp. nov., a novel actinomycete isolated from cadmium-contaminated soil.	Li K, Tang X, Zhao J, Guo Y, Tang Y, Gao J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003262	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67837	Kaiqin Li, Xinke Tang, Jiarong Zhao, Yihui Guo, Yongjie Tang, Jian Gao: Streptomyces cadmiisoli sp. nov., a novel actinomycete isolated from cadmium-contaminated soil. IJSEM 69: 1024 - 1029 2019 ( DOI 10.1099/ijsem.0.003262 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces cadmiisoli (CICC 11050, JCM 32897, ZFG47)

Name and taxonomic classification

Morphology

Cell morphology

Multicellular morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003261055

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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