Name: Bartonella silvatica DSM 23649
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1644

Type strain:

Species: Bartonella silvatica

Culture col. no.: DSM 23649, CIP 109862, JCM 15566, Fuji 23-1

Strain history: CIP <- 2008, H.J. Boulouis, ENVA, Maisons Alfort, France: strain Fuji 23-1 <- LVPH, Nihon Univ., Kanagawa, Japan

NCBI tax ID(s): 357760 (species)

SI-ID 369416

CIP 109862, JCM 15566, DSM 23649

Section

Bartonella silvatica DSM 23649 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from Blood of Apodemus speciosus mice.

Gram-negative
rod-shaped
animal pathogen
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Bartonellaceae*
	Genus	*Bartonella*
	Species	**Bartonella silvatica**
	Full Scientific Name (LPSN)	Bartonella silvatica Inoue et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #23362]	Gram stain	negative
[Ref.: #122607]	Gram stain	negative

[Ref.: #23362]	Cell length	1.16 µm

[Ref.: #23362]	Cell width	0.43 µm

[Ref.: #23362]	Cell shape	rod-shaped
[Ref.: #122607]	Cell shape	rod-shaped

[Ref.: #122607]	Motility	no

[Ref.: #17324]	Type of hemolysis	gamma

[Ref.: #23362]	Colony size	1-2 mm
[Ref.: #23362]	Colony color	grey-whitish
[Ref.: #23362]	Incubation period	14 days
[Ref.: #23362]	Cultivation medium used	HIA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17324]

Culture medium

COLUMBIA BLOOD AGAR (DSMZ Medium 429)

[Ref.: #17324]

Culture medium growth

[Ref.: #17324]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17324]

Culture medium composition

expand / minimize

[Ref.: #23362]

Culture medium

HIA

[Ref.: #23362]

Culture medium growth

[Ref.: #37863]

Culture medium

MEDIUM 70 - columbia agar with horse blood and hemin for Bartonella

[Ref.: #37863]

Culture medium growth

[Ref.: #37863]

Culture medium composition

expand / minimize

[Ref.: #122607]

Culture medium

CIP Medium 70

[Ref.: #122607]

Culture medium growth

[Ref.: #122607]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122607]

Culture medium

CIP Medium 6

[Ref.: #122607]

Culture medium growth

[Ref.: #122607]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17324]	growth	35 °C
[Ref.: #23362]	growth	35 °C
[Ref.: #37863]	growth	37 °C
[Ref.: #67770]	growth	35 °C

[Ref.: #17324]	Temperature range	mesophilic
[Ref.: #23362]	Temperature range	mesophilic
[Ref.: #37863]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17324]

Oxygen tolerance

microaerophile

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23362]	4-nitrophenyl N-acetyl-beta-D-glucosaminide ChEBI	-	hydrolysis
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23362]	arginine ChEBI	+	other
[Ref.: #23362]	bis-4-nitrophenyl phosphate ChEBI	+	hydrolysis
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23362]	glycine ChEBI	+	other
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23362]	leucine ChEBI	+	other
[Ref.: #23362]	lysine ChEBI	+	other
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23362]	methionine ChEBI	+	other
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122607]	nitrate ChEBI	-	reduction
[Ref.: #122607]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23362]	proline ChEBI	-	other
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23362]	tryptophan ChEBI	+	other
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #122607]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #17324]	catalase	-	1.11.1.6
[Ref.: #23362]	catalase	-	1.11.1.6
[Ref.: #122607]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #23362]	cytochrome oxidase	-	1.9.3.1
[Ref.: #17324]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #122607]	oxidase	-
[Ref.: #23362]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #23362]	urease	-	3.5.1.5
[Ref.: #122607]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122607]	11674	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	+/-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122607]	12169	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17324]	Sample type/isolated from	Blood of Apodemus speciosus mice
[Ref.: #17324]	Host species	Apodemus speciosus
[Ref.: #17324]	Country	Japan
[Ref.: #17324]	Country ISO 3 Code	JPN
[Ref.: #17324]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Blood of Apodemus speciosus mice
[Ref.: #67770]	Host species	Apodemus speciosus

[Ref.: #122607]	Sample type/isolated from	Animal, Apodemus speciosus mice, blood
[Ref.: #122607]	Geographic location (country and/or sea, region)	Mount Fuji
[Ref.: #122607]	Country	Japan
[Ref.: #122607]	Country ISO 3 Code	JPN
[Ref.: #122607]	Continent	Asia
[Ref.: #122607]	Isolation date	2003
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB440636 (>99% sequence identity) for Bartonella from Microbeatlas

Aquatic Samples	22
Soil Samples	29
Animal Samples	118
Plant Samples	3
Total Samples	172

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17324]	Pathogenicity (animal)	yes
[Ref.: #17324]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #122607]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17324]	Bartonella silvatica gene for 16S rRNA, partial sequence	AB440636	1349	ENA	357760 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bartonella silvatica DSM 23649	2928179098	draft	JGI IMG/M	357760 tax ID	*

[Ref.: #17324]

GC-content

40.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #17324]

Culture collection no.

DSM 23649, CIP 109862, JCM 15566, Fuji 23-1

[Ref.: #71291]

SI-ID 369416

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bartonella japonica sp. nov. and Bartonella silvatica sp. nov., isolated from Apodemus mice.	Inoue K, Kabeya H, Shiratori H, Ueda K, Kosoy MY, Chomel BB, Boulouis HJ, Maruyama S	Int J Syst Evol Microbiol	10.1099/ijs.0.011528-0	2009	*

References

#17324

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23649

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23362

Kai Inoue, Hidenori Kabeya, Hatsumi Shiratori, Kenji Ueda, Michael Y. Kosoy, Bruno B. Chomel, Henri-Jean Boulouis, Soichi Maruyama: Bartonella japonica sp. nov. and Bartonella silvatica sp. nov., isolated from Apodemus mice. IJSEM 60: 759 - 763 2010 ( DOI 10.1099/ijs.0.011528-0 , PubMed 19656930 )

#37863 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71291

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID369416.1 )

#122607 Collection of Institut Pasteur ; Curators of the CIP; CIP 109862
* These data were automatically processed and therefore are not curated

Change proposal

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