Name: Stutzerimonas urumqiensis T3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164374

Type strain:

Species: Stutzerimonas urumqiensis

Strain Designation: T3

Culture col. no.: JCM 32830, ACCC 60124

Strain history: Y. Zou; Biotechnol. Res. Inst., CAAS, China; T3.

NCBI tax ID(s): 638269 (species)

Section

Stutzerimonas urumqiensis T3 is a mesophilic, Gram-negative, motile bacterium that forms circular colonies and was isolated from Rhizosphere soil of Alhagi sparsifolia collected from Xinjiang.

colony-forming
Gram-negative
motile
other
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	Stutzerimonas
	Species	Stutzerimonas urumqiensis
	Full Scientific Name (LPSN)	Stutzerimonas urumqiensis (Zou et al. 2019) Gomila et al. 2022

Synonym

Pseudomonas urumqiensis

Information on morphological and physiological properties Morphology

[Ref.: #67888]	Gram stain	negative

[Ref.: #67888]	Cell length	1.5-2.3 µm

[Ref.: #67888]	Cell width	0.8-1.2 µm

[Ref.: #67888]	Cell shape	other

[Ref.: #67888]	Motility	yes

[Ref.: #67888]	Colony color	yellow
[Ref.: #67888]	Colony shape	circular
[Ref.: #67888]	Cultivation medium used	LB (Luria-Bertani) agar

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	28 °C
[Ref.: #67888]	growth	15-42 °C
[Ref.: #67888]	optimum	30 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67888]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #67888]			optimum	7
[Ref.: #67888]			growth	4-9

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67888]		NaCl		growth	1-6	%(w/v)
[Ref.: #67888]		NaCl		optimum	1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67888]	(S)-lactate ChEBI	+	carbon source
[Ref.: #67888]	2-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #67888]	2-oxobutanoate ChEBI	-	carbon source
[Ref.: #67888]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #67888]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #67888]	3-O-methyl-D-glucose ChEBI	-	carbon source
[Ref.: #67888]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #67888]	4-nitrophenyl beta-D-galactopyranoside ChEBI	-	hydrolysis
[Ref.: #67888]	acetate ChEBI	+	carbon source
[Ref.: #67888]	acetoacetate ChEBI	+	carbon source
[Ref.: #67888]	adipate ChEBI	-	assimilation
[Ref.: #67888]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #67888]	alpha-lactose ChEBI	-	carbon source
[Ref.: #67888]	bromosuccinate ChEBI	+	carbon source
[Ref.: #67888]	cellobiose ChEBI	-	carbon source
[Ref.: #67888]	citrate ChEBI	-	carbon source
[Ref.: #67888]	D-arabitol ChEBI	+	carbon source
[Ref.: #67888]	D-aspartate ChEBI	-	carbon source
[Ref.: #67888]	D-fructose ChEBI	-	carbon source
[Ref.: #67888]	D-fructose 6-phosphate ChEBI	-	carbon source
[Ref.: #67888]	D-fucose ChEBI	-	carbon source
[Ref.: #67888]	D-galactose ChEBI	-	carbon source
[Ref.: #67888]	D-galacturonic acid ChEBI	-	carbon source
[Ref.: #67888]	D-glucarate ChEBI	+	carbon source
[Ref.: #67888]	D-gluconate ChEBI	+	carbon source
[Ref.: #67888]	D-glucose ChEBI	+	assimilation
[Ref.: #67888]	D-glucose ChEBI	-	builds acid from
[Ref.: #67888]	D-glucose 6-phosphate ChEBI	-	carbon source
[Ref.: #67888]	D-glucuronate ChEBI	+	carbon source
[Ref.: #67888]	D-malate ChEBI	+	carbon source
[Ref.: #67888]	D-mannitol ChEBI	-	carbon source
[Ref.: #67888]	D-mannitol ChEBI	+	assimilation
[Ref.: #67888]	D-mannose ChEBI	-	carbon source
[Ref.: #67888]	D-mannose ChEBI	+	assimilation
[Ref.: #67888]	D-serine ChEBI	-	carbon source
[Ref.: #67888]	D-sorbitol ChEBI	-	carbon source
[Ref.: #67888]	D-trehalose ChEBI	-	carbon source
[Ref.: #67888]	decanoate ChEBI	-	assimilation
[Ref.: #67888]	dextrin ChEBI	+	carbon source
[Ref.: #67888]	esculin ChEBI	+	hydrolysis
[Ref.: #67888]	formate ChEBI	-	carbon source
[Ref.: #67888]	galactarate ChEBI	+	carbon source
[Ref.: #67888]	gamma-aminobutyric acid ChEBI	-	carbon source
[Ref.: #67888]	gelatin ChEBI	-	carbon source
[Ref.: #67888]	gelatin ChEBI	-	hydrolysis
[Ref.: #67888]	gentiobiose ChEBI	-	carbon source
[Ref.: #67888]	glucuronamide ChEBI	-	carbon source
[Ref.: #67888]	glycerol ChEBI	-	carbon source
[Ref.: #67888]	glycine-proline ChEBI	-	carbon source
[Ref.: #67888]	inosine ChEBI	-	carbon source
[Ref.: #67888]	L-alanine ChEBI	-	carbon source
[Ref.: #67888]	L-arabinose ChEBI	-	assimilation
[Ref.: #67888]	L-arginine ChEBI	-	carbon source
[Ref.: #67888]	L-arginine ChEBI	-	hydrolysis
[Ref.: #67888]	L-aspartate ChEBI	-	carbon source
[Ref.: #67888]	L-fucose ChEBI	-	carbon source
[Ref.: #67888]	L-galactonic acid gamma-lactone ChEBI	+	carbon source
[Ref.: #67888]	L-glutamate ChEBI	+	carbon source
[Ref.: #67888]	L-histidine ChEBI	-	carbon source
[Ref.: #67888]	L-malate ChEBI	+	carbon source
[Ref.: #67888]	L-pyroglutamate ChEBI	-	carbon source
[Ref.: #67888]	L-rhamnose ChEBI	-	carbon source
[Ref.: #67888]	L-serine ChEBI	-	carbon source
[Ref.: #67888]	malate ChEBI	+	assimilation
[Ref.: #67888]	maltose ChEBI	+	carbon source
[Ref.: #67888]	maltose ChEBI	+	assimilation
[Ref.: #67888]	melibiose ChEBI	-	carbon source
[Ref.: #67888]	methyl (R)-lactate ChEBI	+	carbon source
[Ref.: #67888]	methyl beta-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #67888]	methyl pyruvate ChEBI	-	carbon source
[Ref.: #67888]	myo-inositol ChEBI	-	carbon source
[Ref.: #67888]	N-acetyl-D-mannosamine ChEBI	-	carbon source
[Ref.: #67888]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #67888]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #67888]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #67888]	n-acetylneuraminate ChEBI	-	carbon source
[Ref.: #67888]	nitrate ChEBI	+	reduction
[Ref.: #67888]	pectin ChEBI	-	carbon source
[Ref.: #67888]	phenylacetate ChEBI	-	assimilation
[Ref.: #67888]	potassium gluconate ChEBI	+	assimilation
[Ref.: #67888]	propionate ChEBI	-	carbon source
[Ref.: #67888]	quinate ChEBI	-	carbon source
[Ref.: #67888]	raffinose ChEBI	-	carbon source
[Ref.: #67888]	salicin ChEBI	-	carbon source
[Ref.: #67888]	sodium citrate ChEBI	-	assimilation
[Ref.: #67888]	stachyose ChEBI	-	carbon source
[Ref.: #67888]	sucrose ChEBI	-	carbon source
[Ref.: #67888]	turanose ChEBI	-	carbon source
[Ref.: #67888]	tween 40 ChEBI	+	carbon source
[Ref.: #67888]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67888]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #67888]	acid phosphatase	+	3.1.3.2
[Ref.: #67888]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67888]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #67888]	alpha-fucosidase	-	3.2.1.51
[Ref.: #67888]	alpha-galactosidase	-	3.2.1.22
[Ref.: #67888]	alpha-glucosidase	+	3.2.1.20
[Ref.: #67888]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67888]	beta-galactosidase	-	3.2.1.23
[Ref.: #67888]	beta-glucosidase	-	3.2.1.21
[Ref.: #67888]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67888]	catalase	+	1.11.1.6
[Ref.: #67888]	cystine arylamidase	+	3.4.11.3
[Ref.: #67888]	cytochrome oxidase	+	1.9.3.1
[Ref.: #67888]	esterase (C 4)	+
[Ref.: #67888]	esterase Lipase (C 8)	+
[Ref.: #67888]	leucine arylamidase	+	3.4.11.1
[Ref.: #67888]	lipase (C 14)	-
[Ref.: #67888]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #67888]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67888]	trypsin	-	3.4.21.4
[Ref.: #67888]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #67888]

Fatty acid	Percentage
C18:1 w6c and/or C18:1w7c	37.7
C16:1 w6c/C16:1 w7c	28.2
C16:0	15.6
C12:0	7.8
C10:0 3OH	3
C12:0 3OH	2.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil of Alhagi sparsifolia collected from Xinjiang
[Ref.: #67770]	Host species	Alhagi sparsifolia
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67888]	Sample type/isolated from	rhizosphere soil of Alhagi sparsifolia
[Ref.: #67888]	Sampling date	2017-10-29
[Ref.: #67888]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67888]	Country	China
[Ref.: #67888]	Country ISO 3 Code	CHN
[Ref.: #67888]	Continent	Asia
[Ref.: #67888]	Enrichment culture	modified Döbereiner medium
[Ref.: #67888]	Enrichment culture composition	10 g sucrose; 5 g malic acid; 0.4 g KH2PO4 x H2O; 0.1 g, K2HPO4 x H2O; 0.2 g, MgSO4 x 7H2O; 0.1 g, NaCl; 0.02 g CaCl2 x 2H2O; 0.01 g FeCl3 x 6H2O; 0.002 g Na2MoO4 x H2O; 15 g agar powder; 1000 ml distilled water; pH 7.0-7.2
[Ref.: #67888]	Enrichment culture duration	3 days
[Ref.: #67888]	Enrichment culture temperature	28 ̊C
[Ref.: #67888]	Isolation/enrichment procedure	soil sample (10 g) collected was added to 100 ml sterile water and shaken with glass beads at room temperature for 15 min, followed by standing for 1 h. Supernatant was ten-fold diluted serially. Each diluted sample (100 µl) was separately spread on modified Döbereiner medium.
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67888]	Pseudomonas urumqiensis 16S ribosomal RNA gene, partial sequence	MH355542	1497	ENA	638269 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	[Pseudomonas] urumqiensis T3	GCA_003640395	contig	GenBank	638269 tax ID

[Ref.: #67888]

GC-content

65.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: [Pseudomonas] urumqiensis T3 NCBI: GCA_003640395.1
[Ref.: #69480]	motile	yes	90.492	yes
[Ref.: #69480]	flagellated	yes	81.073	no
[Ref.: #69480]	gram-positive	no	98.925	yes
[Ref.: #69480]	anaerobic	no	97.967	no
[Ref.: #69480]	aerobic	yes	91.899	no
[Ref.: #69480]	halophile	no	86.487	yes
[Ref.: #69480]	spore-forming	no	96	no
[Ref.: #69480]	glucose-util	yes	90.43	yes
[Ref.: #69480]	thermophile	no	99.343	yes
[Ref.: #69480]	glucose-ferment	no	90.761	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32830, ACCC 60124

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas urumqiensis sp. nov., isolated from rhizosphere soil of Alhagi sparsifolia.	Zou Y, He S, Sun Y, Zhang X, Liu Y, Cheng Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.003390	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#67888

Yuanyuan Zou, Shanwen He, Yuping Sun, Xiaoxia Zhang, Yang Liu, Qi Cheng: Pseudomonas urumqiensis sp. nov., isolated from rhizosphere soil of Alhagi sparsifolia. IJSEM 69: 1760 - 1766 2019 ( DOI 10.1099/ijsem.0.003390 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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[Pseudomonas] urumqiensis T3

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