Cite this strain

"Planococcus antioxidans" (JCM 32826, CICC 24461, Y74)

BacDive ID 164371

Type strain

Strain Designation Y74

Culture col. no. JCM 32826 CICC 24461 Y74

NCBI tax ID(s) 2662420

Special Collections JCM Literature strains

History B. Zhang; Northwest Inst. of Eco-Eviron. & Resour., CAS, China; Y74.

Links

"Planococcus antioxidans" Y74 is an aerobe, Gram-positive, pleomorphic-shaped bacterium that forms circular colonies and was isolated from sandy soil.

Gram-positive pleomorphic-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 394486

JCM 32826

@ref 20215

Last LPSN update 2026-02-09 11:39:50

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Planococcus

Species "Planococcus antioxidans"

Full scientific name Planococcus antioxidans Zhang et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
68251	positive	0.8-3.4 µm	0.8-1.1 µm	pleomorphic-shaped

Colony morphology

@ref	Colony color	Colony shape	Medium used
68251	white	circular	LB (Luria-Bertani) agar

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28
68251	positive	growth	4-42
68251	positive	optimum	28

Culture pH

@ref	Ability	Type	PH	PH range
68251	positive	growth	6-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

68251

Oxygen toleranceaerobe

Spore formation

68251

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68251	NaCl	positive	growth	0-7 %(w/v)

Observation

68251

Observationstrong antioxidant activity

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68251	17057 ChEBI	cellobiose	+/-	carbon source
68251	15824 ChEBI	D-fructose	+	carbon source
68251	12936 ChEBI	D-galactose	+	carbon source
68251	17634 ChEBI	D-glucose	+	carbon source
68251	16899 ChEBI	D-mannitol	+/-	carbon source
68251	16024 ChEBI	D-mannose	+/-	carbon source
68251	17924 ChEBI	D-sorbitol	+/-	carbon source
68251	16551 ChEBI	D-trehalose	+/-	carbon source
68251	5291 ChEBI	gelatin	+	hydrolysis
68251	17234 ChEBI	glucose	-	fermentation
68251	62345 ChEBI	L-rhamnose	+/-	carbon source
68251	17716 ChEBI	lactose	+/-	carbon source
68251	17306 ChEBI	maltose	+	carbon source
68251	28053 ChEBI	melibiose	+/-	carbon source
68251	17268 ChEBI	myo-inositol	+/-	carbon source
68251	16634 ChEBI	raffinose	+/-	carbon source
68251	28017 ChEBI	starch	-	carbon source
68251	17992 ChEBI	sucrose	-	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68251	15688 ChEBI	acetoin

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
68251	15688 ChEBI	acetoin	-
68251	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68251	acid phosphatase	-	3.1.3.2
68251	alkaline phosphatase	-	3.1.3.1
68251	alpha-chymotrypsin	-	3.4.21.1
68251	alpha-fucosidase	-	3.2.1.51
68251	alpha-galactosidase	-	3.2.1.22
68251	alpha-glucosidase	+/-	3.2.1.20
68251	alpha-mannosidase	-	3.2.1.24
68251	beta-galactosidase	-	3.2.1.23
68251	beta-glucosidase	-	3.2.1.21
68251	beta-glucuronidase	-	3.2.1.31
68251	catalase	+	1.11.1.6
68251	cystine arylamidase	+/-	3.4.11.3
68251	cytochrome oxidase	-	1.9.3.1
68251	esterase	-
68251	esterase Lipase (C 8)	+/-
68251	leucine arylamidase	+/-	3.4.11.1
68251	lipase	-
68251	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68251	naphthol-AS-BI-phosphohydrolase	+/-
68251	trypsin	-	3.4.21.4
68251	valine arylamidase	+/-

Fatty acid profile

Metadata FA analysis

@ref

68251

Fatty acid	Percentage
C15:0 anteiso	28.81
C16:1 w7c alcohol	20.88
C14:0 iso	13.9
C16:0 iso	9.62
C17:1 iso I / C17:1 anteiso B	4.37
C15:0 iso	3.54
C17:1 iso w10c	3.05
C16:1 w11c	3.02
C17:0 anteiso	2.81
C17:0 iso	2.77
C18:0	1.14
C16:0	1.04
C17:0 10-methyl	1.03

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
68251	sandy soil	Huatugou, Qinghai province	China	CHN	Asia	modified 216 L agar	7 days	20

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM366863v1 assembly for Planomicrobium sp. Y74	contig	GCA_003668635	2478977.3	2833337243	2478977	70.09

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Planococcus antioxidans strain Y74 16S ribosomal RNA gene, partial sequence	KU601236	1512		2662420

GC content

@ref	GC-content (mol%)	Method
68251	44.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Planomicrobium sp. Y74 Y74
NCBI: GCA_003668635.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	78.31	yes
125438	anaerobic	anaerobicⓘ	no	96.54	yes
125438	aerobic	aerobicⓘ	yes	83.48	yes
125438	spore-forming	spore-formingⓘ	yes	60.57	no
125438	thermophilic	thermophileⓘ	no	93.31	yes
125438	flagellated	motile2+ⓘ	yes	55.85	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characteristics of Planococcus antioxidans sp. nov., an antioxidant-producing strain isolated from the desert soil in the Qinghai-Tibetan Plateau.	Zhang B, Yang R, Zhang G, Liu Y, Zhang D, Zhang W, Chen T, Liu G	Microbiologyopen	10.1002/mbo3.1028	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68251	Binglin Zhang, Ruiqi Yang, Gaosen Zhang, Yang Liu, Dongming Zhang, Wei Zhang, Tuo Chen, Guangxiu Liu: Characteristics of Planococcus antioxidans sp. nov., an antioxidant-producing strain isolated from the desert soil in the Qinghai-Tibetan Plateau. MicrobiologyOpen 9: 1183 - 1196 2020 ( DOI 10.1002/mbo3.1028 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Planococcus antioxidans" (JCM 32826, CICC 24461, Y74)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003668635

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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