Name: Planococcus antioxidans Y74
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164371

Type strain:

Species: Planococcus antioxidans

Strain Designation: Y74

Culture col. no.: JCM 32826, CICC 24461

Strain history: B. Zhang; Northwest Inst. of Eco-Eviron. & Resour., CAS, China; Y74.

NCBI tax ID(s): 2662420 (species)

Section

Planococcus antioxidans Y74 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from sandy soil.

colony-forming
Gram-positive
pleomorphic-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Planococcus*
	Species	"Planococcus antioxidans"
	Full Scientific Name (LPSN)	Planococcus antioxidans Zhang et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #68251]	Gram stain	positive

[Ref.: #68251]	Cell length	0.8-3.4 µm

[Ref.: #68251]	Cell width	0.8-1.1 µm

[Ref.: #68251]	Cell shape	pleomorphic-shaped

[Ref.: #68251]	Colony color	white
[Ref.: #68251]	Colony shape	circular
[Ref.: #68251]	Cultivation medium used	LB (Luria-Bertani) agar

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	28 °C
[Ref.: #68251]	growth	4-42 °C
[Ref.: #68251]	optimum	28 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68251]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68251]			growth	6-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68251]

Oxygen tolerance

aerobe

[Ref.: #68251]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68251]		NaCl		growth	0-7	%(w/v)

[Ref.: #68251]

Observation

strong antioxidant activity

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68251]	cellobiose ChEBI	+/-	carbon source
[Ref.: #68251]	D-fructose ChEBI	+	carbon source
[Ref.: #68251]	D-galactose ChEBI	+	carbon source
[Ref.: #68251]	D-glucose ChEBI	+	carbon source
[Ref.: #68251]	D-mannitol ChEBI	+/-	carbon source
[Ref.: #68251]	D-mannose ChEBI	+/-	carbon source
[Ref.: #68251]	D-sorbitol ChEBI	+/-	carbon source
[Ref.: #68251]	D-trehalose ChEBI	+/-	carbon source
[Ref.: #68251]	gelatin ChEBI	+	hydrolysis
[Ref.: #68251]	glucose ChEBI	-	fermentation
[Ref.: #68251]	L-rhamnose ChEBI	+/-	carbon source
[Ref.: #68251]	lactose ChEBI	+/-	carbon source
[Ref.: #68251]	maltose ChEBI	+	carbon source
[Ref.: #68251]	melibiose ChEBI	+/-	carbon source
[Ref.: #68251]	myo-inositol ChEBI	+/-	carbon source
[Ref.: #68251]	raffinose ChEBI	+/-	carbon source
[Ref.: #68251]	starch ChEBI	-	carbon source
[Ref.: #68251]	sucrose ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68251]		acetoin ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #68251]		acetoin ChEBI	-
[Ref.: #68251]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68251]	acid phosphatase	-	3.1.3.2
[Ref.: #68251]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68251]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68251]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68251]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68251]	alpha-glucosidase	+/-	3.2.1.20
[Ref.: #68251]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68251]	beta-galactosidase	-	3.2.1.23
[Ref.: #68251]	beta-glucosidase	-	3.2.1.21
[Ref.: #68251]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68251]	catalase	+	1.11.1.6
[Ref.: #68251]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #68251]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68251]	esterase	-
[Ref.: #68251]	esterase Lipase (C 8)	+/-
[Ref.: #68251]	leucine arylamidase	+/-	3.4.11.1
[Ref.: #68251]	lipase	-
[Ref.: #68251]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68251]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #68251]	trypsin	-	3.4.21.4
[Ref.: #68251]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68251]

Fatty acid	Percentage
C15:0 anteiso	28.81
C16:1 w7c alcohol	20.88
C14:0 iso	13.9
C16:0 iso	9.62
C17:1 iso I / C17:1 anteiso B	4.37
C15:0 iso	3.54
C17:1 iso w10c	3.05
C16:1 w11c	3.02
C17:0 anteiso	2.81
C17:0 iso	2.77
C18:0	1.14
C16:0	1.04
C17:0 10-methyl	1.03

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68251]	Sample type/isolated from	sandy soil
[Ref.: #68251]	Geographic location (country and/or sea, region)	Huatugou, Qinghai province
[Ref.: #68251]	Country	China
[Ref.: #68251]	Country ISO 3 Code	CHN
[Ref.: #68251]	Continent	Asia
[Ref.: #68251]	Enrichment culture	modified 216 L agar
[Ref.: #68251]	Enrichment culture duration	7 days
[Ref.: #68251]	Enrichment culture temperature	20 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Planococcus sp. Y74 16S ribosomal RNA gene, partial sequence	KU601236	1512	ENA	2662420 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Planomicrobium sp. Y74	GCA_003668635	contig	GenBank	2478977 tax ID

[Ref.: #68251]

GC-content

44.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planomicrobium sp. Y74 Y74 NCBI: GCA_003668635.1
[Ref.: #69480]	motile	yes	80.998	no
[Ref.: #69480]	flagellated	no	51.941	no
[Ref.: #69480]	gram-positive	yes	91.042	yes
[Ref.: #69480]	anaerobic	no	98.732	yes
[Ref.: #69480]	aerobic	yes	93.937	yes
[Ref.: #69480]	halophile	yes	80.959	no
[Ref.: #69480]	spore-forming	yes	55.405	yes
[Ref.: #69480]	glucose-util	yes	86.337	yes
[Ref.: #69480]	glucose-ferment	no	88.166	no
[Ref.: #69480]	thermophile	no	99.746	yes

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32826, CICC 24461

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characteristics of Planococcus antioxidans sp. nov., an antioxidant-producing strain isolated from the desert soil in the Qinghai-Tibetan Plateau.	Zhang B, Yang R, Zhang G, Liu Y, Zhang D, Zhang W, Chen T, Liu G	Microbiologyopen	10.1002/mbo3.1028	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68251

Binglin Zhang, Ruiqi Yang, Gaosen Zhang, Yang Liu, Dongming Zhang, Wei Zhang, Tuo Chen, Guangxiu Liu: Characteristics of Planococcus antioxidans sp. nov., an antioxidant-producing strain isolated from the desert soil in the Qinghai-Tibetan Plateau. MicrobiologyOpen 9: 1183 - 1196 2020 ( DOI 10.1002/mbo3.1028 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Planococcus antioxidans in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Planomicrobium sp. Y74 Y74

Change proposal

Change proposal