Lacrimispora amygdalina (MTCC 12282, DSM 24996, JCM 32788)

Name: Lacrimispora amygdalina (MTCC 12282, DSM 24996, JCM 32788)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164359

Type strain

Culture col. no. MTCC 12282 DSM 24996 JCM 32788

NCBI tax ID(s) 253257

Special Collections DSMZ JCM

Links

Lacrimispora amygdalina JCM 32788 is a mesophilic prokaryote that was isolated from Industrial sludge sample obtained from an industrial waste dump at Patancheru.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133819

JCM 32788

@ref 20215

Last LPSN update 2025-12-16 10:09:26

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Lacrimispora

Species Lacrimispora amygdalina

Full scientific name Lacrimispora amygdalina (Parshina et al. 2003) Haas and Blanchard 2020

Synonyms (3)

"Lacrimispora indica"
Clostridium amygdalinum
Clostridium indicum

BacDive ID	Other strains from **Lacrimispora amygdalina** (1)	Type strain
2826	L. amygdalina BR-10, DSM 12857, ATCC BAA-501 (type strain)

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	93.5

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Industrial sludge sample obtained from an industrial waste dump at Patancheru	Hyderabad	India	IND	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM343203v1 assembly for Lacrimispora amygdalina PI-S10-A1B	scaffold	GCA_003432035	759821.3	2997104915	759821	40.77

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Clostridium indicum strain PI-S10-A1B 16S ribosomal RNA gene, partial sequence	MH193004	1509		759821

GC content

@ref	GC-content (mol%)	Method
67770	42.3	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium indicum PI-S10-A1B
NCBI: GCA_003432035

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	76.90	no
125439	motility	BacteriaNetⓘ	yes	82.80	no
125439	gram_stain	BacteriaNetⓘ	variable	86.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	93.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium indicum PI-S10-A1B
NCBI: GCA_003432035.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	56.69	no
125438	anaerobic	anaerobicⓘ	yes	88.98	no
125438	aerobic	aerobicⓘ	no	87.72	no
125438	spore-forming	spore-formingⓘ	yes	60.44	no
125438	thermophilic	thermophileⓘ	no	93.28	yes
125438	flagellated	motile2+ⓘ	yes	71.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium indicum sp. nov., a novel anaerobic bacterium isolated from the sludge of an industrial effluent.	Gundawar K, Kumari S, Sharma S, Grover V, Patil PB, Korpole S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003199	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lacrimispora amygdalina (MTCC 12282, DSM 24996, JCM 32788)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003432035

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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