Name: Clostridium indicum JCM 32788
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164359

Type strain:

Species: Clostridium indicum

Culture col. no.: JCM 32788, DSM 24996, MTCC 12282

Strain history: S. Korpole; MTCC, India; PI-S10-A1B.

NCBI tax ID(s): 759821 (species)

Section

Clostridium indicum JCM 32788 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from Industrial sludge sample obtained from an industrial waste dump at Patancheru.

Gram-positive
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium indicum**
	Full Scientific Name (LPSN)	Clostridium indicum Gundawar et al. 2019

Synonym

"Lacrimispora indica"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.036

[Ref.: #69480]

Ability of spore formation

yes Confidence in %99.482

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Industrial sludge sample obtained from an industrial waste dump at Patancheru
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hyderabad
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium sp. PI-S10-A1B 16S ribosomal RNA gene, partial sequence	MH193004	1509	ENA	759821 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium indicum PI-S10-A1B	GCA_003432035	scaffold	GenBank	759821 tax ID

[Ref.: #67770]

GC-content

42.3 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium indicum PI-S10-A1B NCBI: GCA_003432035.1
[Ref.: #69481]	spore-forming	yes	84	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium indicum PI-S10-A1B NCBI: GCA_003432035.1
[Ref.: #69480]	motile	yes	74.053	no
[Ref.: #69480]	flagellated	yes	50.81	no
[Ref.: #69480]	gram-positive	yes	55.907	no
[Ref.: #69480]	anaerobic	yes	98.236	no
[Ref.: #69480]	aerobic	no	97.698	no
[Ref.: #69480]	halophile	no	89.636	no
[Ref.: #69480]	spore-forming	yes	83.305	no
[Ref.: #69480]	glucose-util	yes	89.313	no
[Ref.: #69480]	thermophile	no	99.388	no
[Ref.: #69480]	glucose-ferment	yes	67.952	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32788, DSM 24996, MTCC 12282

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium indicum sp. nov., a novel anaerobic bacterium isolated from the sludge of an industrial effluent.	Gundawar K, Kumari S, Sharma S, Grover V, Patil PB, Korpole S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003199	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Clostridium indicum PI-S10-A1B

Clostridium indicum PI-S10-A1B

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