Name: Paraclostridium dentum JCM 32760
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164347

Type strain:

Species: Paraclostridium dentum

Culture col. no.: JCM 32760, MTCC 12836

Strain history: S. Korpole; MTCC, India; SKVG24.

NCBI tax ID(s): 2662455 (species)

Section

Paraclostridium dentum JCM 32760 is a mesophilic bacterium that was isolated from Subgingival dental plaque samples of patients suffering from periodontitis.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Paraclostridium*
	Species	"Paraclostridium dentum"
	Full Scientific Name (LPSN)	Paraclostridium dentum Urvashi et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Subgingival dental plaque samples of patients suffering from periodontitis
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chandigarh
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MF161401 (>99% sequence identity) for Paeniclostridium from Microbeatlas

Aquatic Samples	9424
Soil Samples	14269
Animal Samples	25127
Plant Samples	2734
Total Samples	51554

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paraclostridium sp. strain SKVG24 16S ribosomal RNA gene, partial sequence	MF161401	1403	ENA	2662455 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paraclostridium dentum SKVG24	GCA_012922555	contig	GenBank	2662455 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paraclostridium dentum SKVG24 NCBI: GCA_012922555.1
[Ref.: #69480]	motile	yes	72.405	no
[Ref.: #69480]	flagellated	no	59.201	no
[Ref.: #69480]	gram-positive	yes	91.814	no
[Ref.: #69480]	anaerobic	yes	97.008	no
[Ref.: #69480]	aerobic	no	96.752	no
[Ref.: #69480]	halophile	no	92.52	no
[Ref.: #69480]	spore-forming	yes	93.62	no
[Ref.: #69480]	glucose-util	yes	88.87	no
[Ref.: #69480]	thermophile	no	96.978	yes
[Ref.: #69480]	glucose-ferment	yes	64.16	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32760, MTCC 12836

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paraclostridium dentum, a novel species with pathogenic features isolated from human dental plaque sample.	Urvashi, Choksket S, Jain A, Sharma D, Grover V, Korpole S	Anaerobe	10.1016/j.anaerobe.2020.102239	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Paraclostridium dentum SKVG24

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