Name: Hymenobacter metallicola JCM 32698
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164336

Type strain:

Species: Hymenobacter metallicola

Culture col. no.: JCM 32698, GDMCC 1.1491

Strain history: G. Feng; Guangdong Inst. of Microbiol., China; 9PBR-1.

NCBI tax ID(s): 2563114 (species)

Section

Hymenobacter metallicola JCM 32698 is a mesophilic bacterium that was isolated from Abandoned lead-zinc mine in Meizhou.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter metallicola**
	Full Scientific Name (LPSN)	Hymenobacter metallicola Feng et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Abandoned lead-zinc mine in Meizhou
[Ref.: #67770]	Geographic location (country and/or sea, region)	Guangdong Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hymenobacter sp. strain 9PBR-1 16S ribosomal RNA gene, partial sequence	MH229470	1465	ENA	1898978 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hymenobacter metallicola 9PBR-1	GCA_004745645	contig	GenBank	2563114 tax ID

[Ref.: #67770]

GC-content

59.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hymenobacter metallicola 9PBR-1 NCBI: GCA_004745645.1
[Ref.: #69480]	motile	no	92.608	no
[Ref.: #69480]	flagellated	no	96.112	no
[Ref.: #69480]	gram-positive	no	96.281	no
[Ref.: #69480]	anaerobic	no	99.552	no
[Ref.: #69480]	aerobic	yes	93.537	no
[Ref.: #69480]	halophile	no	93.714	no
[Ref.: #69480]	spore-forming	no	92.828	no
[Ref.: #69480]	thermophile	no	98.331	yes
[Ref.: #69480]	glucose-util	yes	75.093	no
[Ref.: #69480]	glucose-ferment	no	90.882	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32698, GDMCC 1.1491

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter fodinae sp. nov. and Hymenobacter metallicola sp. nov., isolated from abandoned lead-zinc mine.	Feng GD, Zhang J, Chen W, Wang SN, Zhu H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004313	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Hymenobacter metallicola in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Hymenobacter metallicola 9PBR-1

Change proposal

Change proposal