Nocardia stercoris (CGMCC 4.7500, JCM 32663, NEAU-LL90)

Name: Nocardia stercoris (CGMCC 4.7500, JCM 32663, NEAU-LL90)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164318

Type strain

Strain Designation NEAU-LL90

Culture col. no. CGMCC 4.7500 JCM 32663 NEAU-LL90

NCBI tax ID(s) 2483361

Special Collections JCM Literature strains

History J. Zhao; Sch. of Life Sci., Northeast Agric. Univ., China; NEAU-LL90.

Links

Nocardia stercoris NEAU-LL90 is an aerobe, mesophilic, Gram-positive prokaryote that builds a substrate mycelium and was isolated from Cow dung from Shangzhi.

Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133168

JCM 32663

@ref 20215

Last LPSN update 2026-02-09 11:39:49

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Nocardia

Species Nocardia stercoris

Full scientific name Nocardia stercoris Zhao et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.6
125439		91.3
125438		90
125438	positive	92.146
69517	positive

Multicellular morphology

@ref	Forms multicellular complex	Complex name	Complex color	Medium name	Further description
69517		substrate mycelium	dark brown	ISP 7	fragments into irregular rod-like elements

Culture and growth conditions

Culture medium

@ref	Name	Growth
69517	ISP 2
69517	ISP 7
69517	ISP 4
69517	CA Media

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	28	mesophilic
69517	positive	growth	18.0-35.0
69517	positive	optimum	28	mesophilic

Culture pH

@ref	Ability	Type	PH
69517	positive	optimum	7
69517	positive	growth	5.0-11.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
69517	aerobe
125439	obligate aerobe	99.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69517	NaCl	positive	growth	0.0-3.0 %(w/v)

Observation

@ref	Observation
67770	quinones: MK-8(H₄, ω-cycl)
69517	The polar lipids contain diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside.
69517	negative for coagulation and peptonization of milk

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69517	16708 ChEBI	adenine	-	degradation
69517		casein	+	degradation
69517	62968 ChEBI	cellulose	-	degradation
69517	16919 ChEBI	creatine	+/-	nitrogen source
69517	15824 ChEBI	D-fructose	-	carbon source
69517	12936 ChEBI	D-galactose	-	carbon source
69517	17634 ChEBI	D-glucose	+	carbon source
69517	16899 ChEBI	D-mannitol	+	carbon source
69517	16024 ChEBI	D-mannose	-	carbon source
69517	16988 ChEBI	D-ribose	-	carbon source
69517	17924 ChEBI	D-sorbitol	-	carbon source
69517	65327 ChEBI	D-xylose	-	carbon source
69517	4853 ChEBI	esculin	+	hydrolysis
69517	16813 ChEBI	galactitol	-	carbon source
69517	15428 ChEBI	glycine	-	nitrogen source
69517	17368 ChEBI	hypoxanthine	-	degradation
69517	16977 ChEBI	L-alanine	-	nitrogen source
69517	30849 ChEBI	L-arabinose	-	carbon source
69517	16467 ChEBI	L-arginine	-	nitrogen source
69517	17196 ChEBI	L-asparagine	-	nitrogen source
69517	29991 ChEBI	L-aspartate	-	nitrogen source
69517	29985 ChEBI	L-glutamate	+	nitrogen source
69517	18050 ChEBI	L-glutamine	+	nitrogen source
69517	17203 ChEBI	L-proline	-	nitrogen source
69517	62345 ChEBI	L-rhamnose	-	carbon source
69517	17115 ChEBI	L-serine	-	nitrogen source
69517	16857 ChEBI	L-threonine	+/-	nitrogen source
69517	17895 ChEBI	L-tyrosine	-	nitrogen source
69517	17716 ChEBI	lactose	-	carbon source
69517	17306 ChEBI	maltose	+	carbon source
69517	17268 ChEBI	myo-inositol	-	carbon source
69517	17632 ChEBI	nitrate	-	reduction
69517	16634 ChEBI	raffinose	+	carbon source
69517	28017 ChEBI	starch	-	hydrolysis
69517	17992 ChEBI	sucrose	-	carbon source
69517	53424 ChEBI	tween 20	-	degradation
69517	53423 ChEBI	tween 40	-	degradation
69517	53426 ChEBI	tween 80	-	degradation
69517	18186 ChEBI	tyrosine	+	degradation
69517	16199 ChEBI	urea	-	degradation
69517	15318 ChEBI	xanthine	+	degradation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
69517	16136 ChEBI	hydrogen sulfide

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
67770	Cow dung from Shangzhi	Heilongjiang Province, north-east China	China	CHN	Asia
69517	dried cow dung	Shangzhi, Heilongjiang Province	China	CHN	Asia	45.2	127.95 45.2/127.95	succinate-asparagine agar medium	cycloheximide 50mg/l, nalidixic acid 20mg/l	14 days	28	serial dilution technique

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM369626v1 assembly for Nocardia stercoris NEAU-LL90	scaffold	GCA_003696265	2483361.3	2856096030	2483361	63.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Nocardia stercoris strain NEAU-LL90 16S ribosomal RNA gene, partial sequence	MK112564	1509		2483361

GC content

@ref	GC-content (mol%)	Method
67770	69.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nocardia stercoris NEAU-LL90
NCBI: GCA_003696265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	83.20	no
125439	motility	BacteriaNetⓘ	no	91.30	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardia stercoris NEAU-LL90
NCBI: GCA_003696265.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.15	no
125438	anaerobic	anaerobicⓘ	no	96.69	no
125438	aerobic	aerobicⓘ	yes	87.90	no
125438	spore-forming	spore-formingⓘ	yes	58.75	no
125438	thermophilic	thermophileⓘ	no	95.50	yes
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardia stercoris sp. nov., a novel actinomycete isolated from the cow dung.	Zhao J, Han X, Hu H, Ling L, Zhang X, Guo X, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003784	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69517	Junwei Zhao, Xiaoyang Han, Hailong Hu, Ling Ling, Xue Zhang, Xiaowei Guo, Xiangjing Wang, Wensheng Xiang: Nocardia stercoris sp. nov., a novel actinomycete isolated from the cow dung. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003784 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardia stercoris (CGMCC 4.7500, JCM 32663, NEAU-LL90)

Name and taxonomic classification

Morphology

Cell morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003696265

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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