Name: Rectinema subterraneum JCM 32656
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164315

Type strain:

Species: Rectinema subterraneum

Culture col. no.: JCM 32656, ATCC TSD-67

Strain history: L. M. Momper; Massachusetts Inst. of Technol., USA; SURF-ANA1.

NCBI tax ID(s): 2653714 (species)

Section

Rectinema subterraneum JCM 32656 is a thermophilic bacterium that was isolated from Deep terrestrial subsurface 1.4 km below the surface in the former Homestake gold mine, Lead.

thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Treponemataceae*
	Genus	*Rectinema*
	Species	**Rectinema subterraneum**
	Full Scientific Name (LPSN)	Rectinema subterraneum Momper et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	40 °C

[Ref.: #67770]

Temperature range

thermophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Deep terrestrial subsurface 1.4 km below the surface in the former Homestake gold mine, Lead
[Ref.: #67770]	Geographic location (country and/or sea, region)	South Dakota
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KU359248 (>99% sequence identity) for Rectinema from Microbeatlas

Aquatic Samples	124
Soil Samples	55
Animal Samples	2
Plant Samples	2
Total Samples	183

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Spirochaetaceae bacterium SURF-1 16S ribosomal RNA gene, partial sequence	KU359248	1456	ENA	1776749 tax ID

[Ref.: #67770]

GC-content

52.2 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32656, ATCC TSD-67

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rectinema subterraneum sp. nov, a chemotrophic spirochaete isolated from the deep terrestrial subsurface.	Momper L, Semler A, Lu GS, Miyazaki M, Imachi H, Amend JP	Int J Syst Evol Microbiol	10.1099/ijsem.0.004339	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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