Lentibacillus lipolyticus (TISTR 2597, JCM 32625, SSKP1-9)

Name: Lentibacillus lipolyticus (TISTR 2597, JCM 32625, SSKP1-9)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164308

Type strain

Strain Designation SSKP1-9

Culture col. no. TISTR 2597 JCM 32625 SSKP1-9

NCBI tax ID(s) 2510307

Special Collections JCM Literature strains

Links

Lentibacillus lipolyticus SSKP1-9 is an aerobe, moderately halophilic, spore-forming prokaryote that was isolated from Ka-pi, a traditional salted shrimp paste of Thailand.

spore-forming Gram-positive motile rod-shaped aerobe moderately halophilic mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133025

JCM 32625

@ref 20215

Last LPSN update 2025-12-16 10:09:25

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Lentibacillus

Species Lentibacillus lipolyticus

Full scientific name Lentibacillus lipolyticus Booncharoen et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
68217	positive	1.6-2.7 µm	0.4-0.6 µm	rod-shaped		peritrichous

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	35	mesophilic
68217	positive	growth	20-50
68217	positive	optimum	37-40

Culture pH

@ref	Ability	Type	PH
68217	positive	optimum	7
68217	positive	growth	5-8

Physiology and metabolism

Oxygen tolerance

68217

Oxygen toleranceaerobe

Spore formation

68217

Spore formationyes

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
68217	moderately halophilic	NaCl	positive	growth	4-35 %(w/v)
68217		NaCl	positive	optimum	8-16 %(w/v)

Observation

@ref	Observation
67770	quinones: MK-7
68217	formes oval terminal endospores in swollen sporangia

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68217	17128 ChEBI	adipate	-	assimilation
68217	17634 ChEBI	D-glucose	+	builds acid from
68217	17634 ChEBI	D-glucose	-	assimilation
68217	16899 ChEBI	D-mannitol	-	assimilation
68217	16024 ChEBI	D-mannose	-	assimilation
68217	16988 ChEBI	D-ribose	+	builds acid from
68217	16443 ChEBI	D-tagatose	+	builds acid from
68217	4853 ChEBI	esculin	+	builds acid from
68217	5291 ChEBI	gelatin	+	hydrolysis
68217	17234 ChEBI	glucose	-	fermentation
68217	17754 ChEBI	glycerol	+	builds acid from
68217	17120 ChEBI	hexanoate	-	assimilation
68217	30849 ChEBI	L-arabinose	-	assimilation
68217	61995 ChEBI	lecithin	-	hydrolysis
68217	25115 ChEBI	malate	-	assimilation
68217	17306 ChEBI	maltose	-	assimilation
68217	506227 ChEBI	N-acetyl-D-glucosamine	-	assimilation
68217	59640 ChEBI	N-acetylglucosamine	+	builds acid from
68217	17632 ChEBI	nitrate	+	reduction
68217	18401 ChEBI	phenylacetate	-	assimilation
68217		potassium 5-dehydro-D-gluconate	+	builds acid from
68217	32032 ChEBI	potassium gluconate	-	assimilation
68217	53258 ChEBI	sodium citrate	-	assimilation
68217	28017 ChEBI	starch	-	hydrolysis
68217	35020 ChEBI	tributyrin	-	hydrolysis
68217	53424 ChEBI	tween 20	-	hydrolysis
68217	53423 ChEBI	tween 40	+	hydrolysis
68217	53425 ChEBI	tween 60	+	hydrolysis
68217	53426 ChEBI	tween 80	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Group ID	Metabolite	Sensitivity conc.	Resistance conc.
68217	2637		amikacin	30 µg (disc)
68217	2676		amoxicillin	30 µg (disc)
68217	2676	10	amoxicillin	30 µg (disc)
68217	28971		ampicillin	10 µg (disc)
68217	28669		bacitracin	10 Unit (disc)
68217	478164		cefepime	30 µg (disc)
68217	204928		cefotaxime	30 µg (disc)
68217	209807		cefoxitin	30 µg (disc)
68217	3508		ceftazidime	30 µg (disc)
68217	29007		ceftriaxone	30 µg (disc)
68217	17698		chloramphenicol	30 µg (disc)
68217	48947	10	clavulanic acid	30 µg (disc)
68217	3745		clindamycin	2 µg (disc)
68217	404903		ertapenem	10 µg (disc)
68217	48923		erythromycin	15 µg (disc)
68217	17833		gentamicin	10 µg (disc)
68217	471744		imipenem	10 µg (disc)
68217	6104		kanamycin	30 µg (disc)
68217	63598		levofloxacin	5 µg (disc)
68217	43968		meropenem	10 µg (disc)
68217	100147		nalidixic acid		30 µg (disc)
68217	7507		neomycin		30 µg (disc)
68217	7528		netilmicin	30 µg (disc)
68217	71415		nitrofurantoin	300 µg (disc)
68217	28368		novobiocin	30 µg (disc)
68217	7660		nystatin	10 µg (disc)
68217	8232	16	piperacillin	110 µg (disc)
68217	8309		polymyxin b	300 Unit (disc)
68217	28077		rifampicin	30 µg (disc)
68217	17076		streptomycin	10 µg (disc)
68217	9332	26	sulfamethoxazole		25 µg (disc)
68217	9421	16	tazobactam	110 µg (disc)
68217	27902		tetracycline	30 µg (disc)
68217	45924	26	trimethoprim		25 µg (disc)
68217	28001		vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68217	15688 ChEBI	acetoin
68217	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
68217	15688 ChEBI	acetoin	-
68217	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68217	alkaline phosphatase	+	3.1.3.1
68217	alpha-chymotrypsin	+	3.4.21.1
68217	arginine dihydrolase	-	3.5.3.6
68217	catalase	+	1.11.1.6
68217	cytochrome oxidase	+	1.9.3.1
68217	esterase (C 4)	+
68217	esterase Lipase (C 8)	+
68217	leucine arylamidase	+	3.4.11.1
68217	naphthol-AS-BI-phosphohydrolase	+
68217	urease	-	3.5.1.5
68217	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

68217

Fatty acid	Percentage
C15:0 anteiso	51.4
C17:0 anteiso	17.8
C16:0 iso	11
C16:0	5.1
C14:0 anteiso	4
C15:0 iso	3.3
C14:0	1.3
C17:1 iso w5c	1.1
C17:0 iso	0.7
C16:1 w7c alcohol	0.7
C16:1 w11c	0.6
C18:0 iso	0.5
C17:0 iso 3OH	0.4
C15:0 2OH	0.4
C19:0 anteiso	0.32
C12:0	0.3
C13:0 anteiso	0.2
C16:1 w6c/C16:1 w7c	0.2
C18:3 w6,9,12c	0.1

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
67770	Ka-pi, a traditional salted shrimp paste of Thailand
68217	Ka-pi, a traditional salted shrimp paste of Thailand	Samut Sakhon Province	Thailand	THA	Asia	13.5452	100.276 13.5452/100.276	JCM No. 377	3-5 days	37

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM414579v1 assembly for Lentibacillus lipolyticus SSKP1-9	scaffold	GCA_004145795	2510307.3	2883905685	2510307	20.13

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Lentibacillus sp. SSKP1-9 gene for 16S ribosomal RNA, partial sequence	LC367329	1445		2510307

GC content

@ref	GC-content (mol%)	Method
68217	44.6	genome sequence analysis
67770	44.61	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lentibacillus lipolyticus SSKP1-9
NCBI: GCA_004145795

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	85.40	no
125439	motility	BacteriaNetⓘ	yes	81.60	no
125439	gram_stain	BacteriaNetⓘ	variable	87.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lentibacillus sp. SSKP1-9
PATRIC: 2510307.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	70.12	no
125438	anaerobic	anaerobicⓘ	no	95.47	yes
125438	spore-forming	spore-formingⓘ	yes	73.67	no
125438	aerobic	aerobicⓘ	yes	81.04	yes
125438	thermophilic	thermophileⓘ	no	90.51	yes
125438	flagellated	motile2+ⓘ	yes	75.78	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lentibacillus lipolyticus sp. nov., a moderately halophilic bacterium isolated from shrimp paste (Ka-pi).	Booncharoen A, Visessanguan W, Kuncharoen N, Yiamsombut S, Santiyanont P, Mhuantong W, Charoensri S, Rojsitthisak P, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003658	2019
Phylogeny	Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food.	Oh YJ, Kim JY, Jo HE, Park HK, Lim SK, Kwon MS, Choi HJ	J Microbiol	10.1007/s12275-020-9507-7	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68217	Auttaporn Booncharoen, Wonnop Visessanguan, Nattakorn Kuncharoen, Supalurk Yiamsombut, Pannita Santiyanont, Wuttichai Mhuantong, Salisa Charoensri, Pornchai Rojsitthisak and Somboon Tanasupawat: Lentibacillus lipolyticus sp. nov., a moderately halophilic bacterium isolated from shrimp paste (Ka-pi). IJSEM 69: 3529 - 3536 2019 ( DOI 10.1099/ijsem.0.003658 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lentibacillus lipolyticus (TISTR 2597, JCM 32625, SSKP1-9)

Name and taxonomic classification