Name: Pseudomonas qingdaonensis JCM 32579
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164301

Type strain:

Species: Pseudomonas qingdaonensis

Culture col. no.: JCM 32579, CGMCC 1.16493, KCTC 62384

Strain history: M. Wang; Shandong Peanut Res. Inst., China; JJ3.

NCBI tax ID(s): 2056231 (species)

Special Collections

JCM
KCTC

Section

Pseudomonas qingdaonensis JCM 32579 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Peanut rhizospheric soil in Qingdao.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	"Pseudomonas qingdaonensis"
	Full Scientific Name (LPSN)	Pseudomonas qingdaonensis Wang et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.5

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.161

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Peanut rhizospheric soil in Qingdao
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shandong Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MG589917 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	2210
Soil Samples	1775
Animal Samples	2599
Plant Samples	866
Total Samples	7450

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas qingdaonensis strain JJ3 16S ribosomal RNA gene, partial sequence	MG589917	1525	GenBank ENA	2056231 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas qingdaonensis JJ3	GCA_002806685	scaffold	GenBank ENA	2056231 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas qingdaonensis JJ3 NCBI: GCA_002806685.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.905	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.161	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.195	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.497	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	86.179	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32579, CGMCC 1.16493, KCTC 62384

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas qingdaonensis sp. nov., an aflatoxin-degrading bacterium, isolated from peanut rhizospheric soil.	Wang MQ, Wang Z, Yu LN, Zhang CS, Bi J, Sun J	Arch Microbiol	10.1007/s00203-019-01636-w	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Pseudomonas qingdaonensis JJ3

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