Streptomyces paucisporeus (DSM 41946, CGMCC 4.2025, JCM 13276)

Name: Streptomyces paucisporeus (DSM 41946, CGMCC 4.2025, JCM 13276)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16430

Type strain

Strain Designation 1413

Culture col. no. DSM 41946 CGMCC 4.2025 JCM 13276 1413 NBRC 102072 1 more

NCBI tax ID(s) 310782

Special Collections DSMZ JCM CIP Literature strains

History DSMZ <- CGMCC; CGMCC 4.2025 JCM <-- Y. Huang 1413.

Links

Streptomyces paucisporeus 1413 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from Dashao pine forest soil.

spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 291005

CGMCC 4.2025,JCM 13276,CIP 109250,NBRC 102072,DSM 41946

@ref 20215

Last LPSN update 2026-05-29 08:28:46

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces paucisporeus

Full scientific name Streptomyces paucisporeus Xu et al. 2006

Synonyms (1)

Actinacidiphila paucisporea

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
31645	positive	rod-shaped
125439			96.43
125438	positive		90.964
125439	positive		99.78

Pigmentation

31645

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15749	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
15749	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)		Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15749	positive	growth	28
31645	positive	growth	20-37
31645	positive	optimum	30-37
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
31645	positive	optimum	5.5-7.5
31645	positive	growth	4.5-7.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31645	aerobe
125438	aerobe	91.167
125439	facultative anaerobe	97.343

Spore formation

@ref	Spore formation	Confidence
31645
125438		92.56
125439		95.061

Observation

@ref	Observation
31645	aggregates in chains
67770	quinones: MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31645	16449 ChEBI	alanine	+	carbon source
31645	29016 ChEBI	arginine	+	carbon source
31645	35391 ChEBI	aspartate	+	carbon source
31645	17057 ChEBI	cellobiose	+	carbon source
31645	4853 ChEBI	esculin	+	hydrolysis
31645	28260 ChEBI	galactose	+	carbon source
31645	17234 ChEBI	glucose	+	carbon source
31645	29987 ChEBI	glutamate	+	carbon source
31645	29864 ChEBI	mannitol	+	carbon source
31645	28044 ChEBI	phenylalanine	+	carbon source
31645	30911 ChEBI	sorbitol	+	carbon source

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	acetate fermentation	100	4 of 4
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	chorismate metabolism	100	9 of 9
66794	kanosamine biosynthesis II	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	aclacinomycin biosynthesis	100	7 of 7
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	starch degradation	100	10 of 10
66794	dTDPLrhamnose biosynthesis	100	8 of 8
66794	adipate degradation	100	2 of 2
66794	cellulose degradation	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	mannosylglycerate biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	myo-inositol biosynthesis	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	d-mannose degradation	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	ketogluconate metabolism	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	vitamin B12 metabolism	85.29	29 of 34
66794	leucine metabolism	84.62	11 of 13
66794	alanine metabolism	82.76	24 of 29
66794	metabolism of disaccharids	81.82	9 of 11
66794	purine metabolism	80.85	76 of 94
66794	factor 420 biosynthesis	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	heme metabolism	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	allantoin degradation	77.78	7 of 9
66794	lipid metabolism	77.42	24 of 31
66794	urea cycle	76.92	10 of 13
66794	histidine metabolism	75.86	22 of 29
66794	cyclohexanol degradation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	tryptophan metabolism	73.68	28 of 38
66794	proline metabolism	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	degradation of hexoses	72.22	13 of 18
66794	degradation of sugar acids	72	18 of 25
66794	tyrosine metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	degradation of pentoses	71.43	20 of 28
66794	pyrimidine metabolism	71.11	32 of 45
66794	non-pathway related	71.05	27 of 38
66794	arginine metabolism	70.83	17 of 24
66794	glycolysis	70.59	12 of 17
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	vitamin B1 metabolism	69.23	9 of 13
66794	oxidative phosphorylation	67.03	61 of 91
66794	cyanate degradation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	lysine metabolism	66.67	28 of 42
66794	acetoin degradation	66.67	2 of 3
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	glutathione metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	carnitine metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	lipoate biosynthesis	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	mevalonate metabolism	57.14	4 of 7
66794	cholesterol biosynthesis	54.55	6 of 11
66794	sulfate reduction	53.85	7 of 13
66794	phenylmercury acetate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	carotenoid biosynthesis	50	11 of 22
66794	quinate degradation	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	grixazone biosynthesis	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	lipid A biosynthesis	44.44	4 of 9
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	chlorophyll metabolism	44.44	8 of 18
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	ascorbate metabolism	40.91	9 of 22
66794	creatinine degradation	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	hydrogen production	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	polyamine pathway	39.13	9 of 23
66794	arachidonic acid metabolism	38.89	7 of 18
66794	vitamin B6 metabolism	36.36	4 of 11
66794	sulfoquinovose degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	methanogenesis from CO2	25	3 of 12
66794	catecholamine biosynthesis	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	daunorubicin biosynthesis	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15749	Dashao pine forest soil	Guandu, Yunnan Province	China	CHN	Asia
67770	Dashao pine-forest soil	Guandu, Yunnan Province	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15749	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2667527448 annotated assembly for Actinacidiphila paucisporea CGMCC 4.2025	scaffold	GCA_900142575	310782.3	2667527448	310782	60.92

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15749	Streptomyces paucisporeus strain 1413 16S ribosomal RNA gene, partial sequence	AY876943	1446		310782

GC content

@ref	GC-content (mol%)	Method
15749	74.8
67770	72.3	genome sequence analysis
67770	74.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2667527448 annotated assembly for Actinacidiphila paucisporea CGMCC 4.2025
NCBI: GCA_900142575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	99.78	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	97.34	no
125439	motility	BacteriaNetⓘ	no	96.43	no
125439	spore_formation	BacteriaNetⓘ	yes	95.06	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces paucisporeus strain CGMCC 4.2025
PATRIC: 310782.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.96	no
125438	anaerobic	anaerobicⓘ	no	95.07	yes
125438	spore-forming	spore-formingⓘ	yes	92.56	yes
125438	aerobic	aerobicⓘ	yes	91.17	yes
125438	thermophilic	thermophileⓘ	no	94.90	yes
125438	flagellated	motile2+ⓘ	no	89.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Actinobacteria associated with the marine sponges Cinachyra sp., Petrosia sp., and Ulosa sp. and their culturability.	Khan ST, Takagi M, Shin-ya K.	Microbes Environ	10.1264/jsme2.me11270	2012
Phylogeny	Streptomyces bryophytorum sp. nov., an endophytic actinomycete isolated from moss (Bryophyta).	Li C, Jin P, Liu C, Ma Z, Zhao J, Li J, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-016-0722-5	2016
Phylogeny	Neutrotolerant acidophilic Streptomyces species isolated from acidic soils in China: Streptomyces guanduensis sp. nov., Streptomyces paucisporeus sp. nov., Streptomyces rubidus sp. nov. and Streptomyces yanglinensis sp. nov.	Xu C, Wang L, Cui Q, Huang Y, Liu Z, Zheng G, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.63959-0	2006

References

#15749	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41946
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27928	IJSEM 1109 2006 ( DOI 10.1099/ijs.0.63959-0 , PubMed 16627663 )
#31645	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27928
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces paucisporeus (DSM 41946, CGMCC 4.2025, JCM 13276)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900142575

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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