Name: Bartonella japonica DSM 23650
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1643

Type strain:

Species: Bartonella japonica

Culture col. no.: DSM 23650, CIP 109861, JCM 15567, Fuji 18-1

Strain history: CIP <- 2008, H.J. Boulouis, ENVA, Maisons Alfort, France: strain Fuji 18-1 <- LVPH, Nihon Univ., Kanagawa, Japan

NCBI tax ID(s): 357761 (species)

SI-ID 369415

CIP 109861, JCM 15567, DSM 23650

Section

Bartonella japonica DSM 23650 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from Blood of Apodemus argenteus mice.

Gram-negative
rod-shaped
animal pathogen
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Bartonellaceae*
	Genus	*Bartonella*
	Species	**Bartonella japonica**
	Full Scientific Name (LPSN)	Bartonella japonica Inoue et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #23362]	Gram stain	negative
[Ref.: #120313]	Gram stain	negative

[Ref.: #23362]	Cell length	0.74 µm

[Ref.: #23362]	Cell width	0.36 µm

[Ref.: #23362]	Cell shape	rod-shaped
[Ref.: #120313]	Cell shape	rod-shaped

[Ref.: #120313]	Motility	no

[Ref.: #17325]	Type of hemolysis	gamma

[Ref.: #23362]	Colony size	1-2 mm
[Ref.: #23362]	Colony color	grey-whitish
[Ref.: #23362]	Incubation period	14 days
[Ref.: #23362]	Cultivation medium used	HIA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17325]

Culture medium

COLUMBIA BLOOD AGAR (DSMZ Medium 429)

[Ref.: #17325]

Culture medium growth

[Ref.: #17325]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17325]

Culture medium composition

expand / minimize

[Ref.: #23362]

Culture medium

HIA

[Ref.: #23362]

Culture medium growth

[Ref.: #40250]

Culture medium

MEDIUM 70 - columbia agar with horse blood and hemin for Bartonella

[Ref.: #40250]

Culture medium growth

[Ref.: #40250]

Culture medium composition

expand / minimize

[Ref.: #120313]

Culture medium

CIP Medium 70

[Ref.: #120313]

Culture medium growth

[Ref.: #120313]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17325]	growth	35 °C
[Ref.: #23362]	growth	35 °C
[Ref.: #40250]	growth	37 °C
[Ref.: #67770]	growth	35 °C

[Ref.: #17325]	Temperature range	mesophilic
[Ref.: #23362]	Temperature range	mesophilic
[Ref.: #40250]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17325]

Oxygen tolerance

microaerophile

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23362]	4-nitrophenyl N-acetyl-beta-D-glucosaminide ChEBI	-	hydrolysis
[Ref.: #23362]	arginine ChEBI	+	other
[Ref.: #23362]	bis-4-nitrophenyl phosphate ChEBI	+	hydrolysis
[Ref.: #23362]	glycine ChEBI	+	other
[Ref.: #23362]	leucine ChEBI	+	other
[Ref.: #23362]	lysine ChEBI	+	other
[Ref.: #23362]	methionine ChEBI	+	other
[Ref.: #120313]	nitrate ChEBI	-	reduction
[Ref.: #120313]	nitrite ChEBI	-	reduction
[Ref.: #23362]	proline ChEBI	-	other
[Ref.: #23362]	trehalose ChEBI	-	hydrolysis
[Ref.: #23362]	tryptophan ChEBI	+	other
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120313]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #17325]	catalase	-	1.11.1.6
[Ref.: #23362]	catalase	-	1.11.1.6
[Ref.: #120313]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #23362]	cytochrome oxidase	-	1.9.3.1
[Ref.: #17325]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120313]	oxidase	-
[Ref.: #23362]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #23362]	urease	-	3.5.1.5
[Ref.: #120313]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120313]	12168	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17325]	Sample type/isolated from	Blood of Apodemus argenteus mice
[Ref.: #17325]	Host species	Apodemus argenteus
[Ref.: #17325]	Country	Japan
[Ref.: #17325]	Country ISO 3 Code	JPN
[Ref.: #17325]	Continent	Asia

[Ref.: #23362]	Sample type/isolated from	blood of the Japanese field mouse
[Ref.: #23362]	Geographic location (country and/or sea, region)	forest of Mount Fuji
[Ref.: #23362]	Country	Japan
[Ref.: #23362]	Country ISO 3 Code	JPN
[Ref.: #23362]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Blood of Apodemus argenteus mice
[Ref.: #67770]	Host species	Apodemus argenteus

[Ref.: #120313]	Sample type/isolated from	Animal, Apodemus argenteus mice, blood
[Ref.: #120313]	Geographic location (country and/or sea, region)	Mount Fuji
[Ref.: #120313]	Country	Japan
[Ref.: #120313]	Country ISO 3 Code	JPN
[Ref.: #120313]	Continent	Asia
[Ref.: #120313]	Isolation date	2003
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17325]	Pathogenicity (animal)	yes
[Ref.: #17325]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #120313]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17325]	Bartonella japonica gene for 16S rRNA, partial sequence	AB440632	1347	ENA	357761 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bartonella japonica DSM 23650	2928252644	draft	JGI IMG/M	357761 tax ID	*

[Ref.: #17325]

GC-content

40.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #17325]

Culture collection no.

DSM 23650, CIP 109861, JCM 15567, Fuji 18-1

[Ref.: #71290]

SI-ID 369415

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bartonella japonica sp. nov. and Bartonella silvatica sp. nov., isolated from Apodemus mice.	Inoue K, Kabeya H, Shiratori H, Ueda K, Kosoy MY, Chomel BB, Boulouis HJ, Maruyama S	Int J Syst Evol Microbiol	10.1099/ijs.0.011528-0	2009	*

References

#17325

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23650

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23362

Kai Inoue, Hidenori Kabeya, Hatsumi Shiratori, Kenji Ueda, Michael Y. Kosoy, Bruno B. Chomel, Henri-Jean Boulouis, Soichi Maruyama: Bartonella japonica sp. nov. and Bartonella silvatica sp. nov., isolated from Apodemus mice. IJSEM 60: 759 - 763 2010 ( DOI 10.1099/ijs.0.011528-0 , PubMed 19656930 )

#40250 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#71290

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID369415.1 )

#120313 Collection of Institut Pasteur ; Curators of the CIP; CIP 109861
* These data were automatically processed and therefore are not curated

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