Name: Pseudoflavonifractor sp. JCM 32528
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164290

Type strain:

Species: Pseudoflavonifractor sp.

Culture col. no.: JCM 32528

Strain history: M. Kuroda; Natl. Inst. of Infect. Dis., Japan; Choco116.

NCBI tax ID(s): 1980281 (species)

Special Collections

Other strains from Pseudoflavonifractor sp.

Section

Pseudoflavonifractor sp. JCM 32528 is an anaerobe, mesophilic bacterium that was isolated from Fecal sample of a healthy Japanese adult.

anaerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Pseudoflavonifractor*
	Full Scientific Name (LPSN)	Pseudoflavonifractor Carlier et al. 2010

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %93.081

[Ref.: #69481]

Ability of spore formation

no Confidence in %93

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Fecal sample of a healthy Japanese adult
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridiales bacterium Choco116	GCA_003202955	contig	GenBank ENA	2109689 tax ID
[Ref.: #66792]	Clostridiales bacterium Choco116	2109689.3	wgs	PATRIC	2109689 tax ID	*

[Ref.: #67770]

GC-content

56.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridiales bacterium Choco116 PATRIC: 2109689.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	93	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridiales bacterium Choco116 PATRIC: 2109689.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	69.178	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	93.081	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	58.873	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.224	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.795	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.821	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32528

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Clostridiales bacterium Choco116

Clostridiales bacterium Choco116

Change proposal

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