Name: Actinoplanes solisilvae JCM 32512
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164277

Type strain:

Species: Actinoplanes solisilvae

Culture col. no.: JCM 32512, CGMCC 4.7580, LAM 7112

Strain history: Z. Ruan; CAAS, China; LAM7112.

Section

Actinoplanes solisilvae JCM 32512 is an aerobe, spore-forming, mesophilic bacterium that forms irregular colonies and was isolated from Soil from a birch forest in Habahe county of Xinjiang Uygur Autonomous Region.

colony-forming
Gram-positive
motile
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinoplanes*
	Species	"Actinoplanes solisilvae"
	Full Scientific Name (LPSN)	Actinoplanes solisilvae Ma et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #68314]	Gram stain	positive

[Ref.: #68314]	Motility	yes

[Ref.: #68314]	Colony color	yellow
[Ref.: #68314]	Colony shape	irregular
[Ref.: #68314]	Incubation period	7 days
[Ref.: #68314]	Cultivation medium used	Trypticase Soy Agar (TSA)

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	35 °C
[Ref.: #68314]	growth	20-45 °C
[Ref.: #68314]	optimum	35 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68314]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68314]			optimum	7
[Ref.: #68314]			growth	5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68314]

Oxygen tolerance

aerobe

[Ref.: #68314]	Spore description	motile
[Ref.: #68314]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68314]		NaCl		growth	0-10	%(w/v)
[Ref.: #68314]		NaCl		optimum	3	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-9(H₂), MK-9(H₄) and MK-9(H₆)
[Ref.: #68314]	Observation	forms substrate mycelia and irregular sporangia on ISP 2 media
[Ref.: #68314]	Observation	forms aerial hyphae

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68314]	adipate ChEBI	-	assimilation
[Ref.: #68314]	amygdalin ChEBI	-	builds acid from
[Ref.: #68314]	arabinose ChEBI	-	assimilation
[Ref.: #68314]	arbutin ChEBI	-	builds acid from
[Ref.: #68314]	cellobiose ChEBI	+/-	builds acid from
[Ref.: #68314]	citrate ChEBI	-	assimilation
[Ref.: #68314]	D-arabinose ChEBI	-	builds acid from
[Ref.: #68314]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68314]	D-fructose ChEBI	-	builds acid from
[Ref.: #68314]	D-fucose ChEBI	-	builds acid from
[Ref.: #68314]	D-galactose ChEBI	+	builds acid from
[Ref.: #68314]	D-glucose ChEBI	+	fermentation
[Ref.: #68314]	D-glucose ChEBI	-	builds acid from
[Ref.: #68314]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68314]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68314]	D-mannose ChEBI	-	builds acid from
[Ref.: #68314]	D-ribose ChEBI	-	builds acid from
[Ref.: #68314]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68314]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68314]	D-xylose ChEBI	-	builds acid from
[Ref.: #68314]	erythritol ChEBI	-	builds acid from
[Ref.: #68314]	esculin ChEBI	+	builds acid from
[Ref.: #68314]	galactitol ChEBI	-	builds acid from
[Ref.: #68314]	gelatin ChEBI	+	hydrolysis
[Ref.: #68314]	gentiobiose ChEBI	-	builds acid from
[Ref.: #68314]	gluconate ChEBI	-	assimilation
[Ref.: #68314]	glucose ChEBI	-	assimilation
[Ref.: #68314]	glycerol ChEBI	-	builds acid from
[Ref.: #68314]	glycogen ChEBI	-	builds acid from
[Ref.: #68314]	hexanoate ChEBI	-	assimilation
[Ref.: #68314]	inulin ChEBI	-	builds acid from
[Ref.: #68314]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68314]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68314]	L-fucose ChEBI	-	builds acid from
[Ref.: #68314]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #68314]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68314]	L-xylose ChEBI	-	builds acid from
[Ref.: #68314]	lactose ChEBI	-	builds acid from
[Ref.: #68314]	malate ChEBI	-	assimilation
[Ref.: #68314]	maltose ChEBI	-	assimilation
[Ref.: #68314]	maltose ChEBI	-	builds acid from
[Ref.: #68314]	mannitol ChEBI	-	assimilation
[Ref.: #68314]	mannose ChEBI	-	assimilation
[Ref.: #68314]	melezitose ChEBI	-	builds acid from
[Ref.: #68314]	melibiose ChEBI	-	builds acid from
[Ref.: #68314]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #68314]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #68314]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #68314]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68314]	N-acetyl-D-glucosamine ChEBI	+	assimilation
[Ref.: #68314]	N-acetyl-D-glucosamine ChEBI	+	builds acid from
[Ref.: #68314]	nitrate ChEBI	-	reduction
[Ref.: #68314]	phenylacetate ChEBI	-	assimilation
[Ref.: #68314]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #68314]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #68314]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #68314]	raffinose ChEBI	+	builds acid from
[Ref.: #68314]	ribitol ChEBI	-	builds acid from
[Ref.: #68314]	salicin ChEBI	-	builds acid from
[Ref.: #68314]	starch ChEBI	+	hydrolysis
[Ref.: #68314]	starch ChEBI	-	builds acid from
[Ref.: #68314]	sucrose ChEBI	-	builds acid from
[Ref.: #68314]	trehalose ChEBI	-	builds acid from
[Ref.: #68314]	turanose ChEBI	-	builds acid from
[Ref.: #68314]	tween 20 ChEBI	+	hydrolysis
[Ref.: #68314]	tween 40 ChEBI	+	hydrolysis
[Ref.: #68314]	tween 60 ChEBI	+	hydrolysis
[Ref.: #68314]	tween 80 ChEBI	+	hydrolysis
[Ref.: #68314]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68314]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68314]	acid phosphatase	-	3.1.3.2
[Ref.: #68314]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68314]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68314]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68314]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68314]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68314]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68314]	beta-galactosidase	-	3.2.1.23
[Ref.: #68314]	beta-glucosidase	-	3.2.1.21
[Ref.: #68314]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68314]	catalase	+	1.11.1.6
[Ref.: #68314]	chymotrypsin	-	3.4.4.5
[Ref.: #68314]	cystine arylamidase	+	3.4.11.3
[Ref.: #68314]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68314]	esterase (C 4)	-
[Ref.: #68314]	esterase Lipase (C 8)	-
[Ref.: #68314]	gelatinase	-
[Ref.: #68314]	leucine arylamidase	+	3.4.11.1
[Ref.: #68314]	lipase (C 14)	-
[Ref.: #68314]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68314]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #68314]	trypsin	+	3.4.21.4
[Ref.: #68314]	urease	-	3.5.1.5
[Ref.: #68314]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68314]

Fatty acid	Percentage
C16:0 iso	24.7
C15:0 anteiso	18.2
C17:0 anteiso	10.6
C15:0 iso	6.1
C18:1 w9c	4.7
C14:0 iso	4.3
C17:1 anteiso w9c	4.2
C17:1 w8c	4
C17:0 iso	3.5
C16:0	3.1
C15:1 anteiso A	3
C16:0 10-methyl/C17:1 iso w9c	2.6
C17:0 cyclo	2.5
C16:1 iso G	1.8
C15:1 iso G	1.6
C18:1 w6c/C18:1 w7c	1
C16:1 w6c/C16:1 w7c	0.9
C18:0 iso	0.8
C18:0	0.8
C17:0	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil from a birch (Betula platyphylla) forest in Habahe county of Xinjiang Uygur Autonomous Region
[Ref.: #67770]	Host species	Betula platyphylla
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #68314]	Sample type/isolated from	tetracycline degrading consortium enriched with betula platyphylla
[Ref.: #68314]	Geographic location (country and/or sea, region)	Xinjiang Uygur Autonomous Region
[Ref.: #68314]	Country	China
[Ref.: #68314]	Country ISO 3 Code	CHN
[Ref.: #68314]	Continent	Asia
[Ref.: #68314]	Enrichment culture	Medium supplemented with 10 mg/L tetracycline
[Ref.: #68314]	Enrichment culture duration	7 days
[Ref.: #68314]	Enrichment culture temperature	35 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68314]	Actinoplanes sp. strain LAM7112 16S ribosomal RNA gene, partial sequence	MF784352	1478	ENA	1871 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinoplanes solisilvae LAM7112	GCA_003999975	contig	GenBank	2486853 tax ID

[Ref.: #68314]

GC-content

70 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoplanes sp. LAM7112 LAM7112 NCBI: GCA_003999975.1
[Ref.: #69480]	motile	yes	62.221	no
[Ref.: #69480]	flagellated	no	91.464	no
[Ref.: #69480]	gram-positive	yes	87.616	yes
[Ref.: #69480]	anaerobic	no	98.916	yes
[Ref.: #69480]	aerobic	yes	91.086	no
[Ref.: #69480]	halophile	no	96.288	no
[Ref.: #69480]	spore-forming	yes	92.116	yes
[Ref.: #69480]	thermophile	no	98.743	yes
[Ref.: #69480]	glucose-util	yes	88.75	no
[Ref.: #69480]	glucose-ferment	no	84.916	yes

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32512, CGMCC 4.7580, LAM 7112

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68314

Qingyun Ma, Qi Zhang, Xu Jiang, Delong Kong, Xiaoyan Han, Huiying Xue, Yiqing Zhou, Yuqin Zhang, Wei Zhang & Zhiyong Ruan: Actinoplanes solisilvae sp. nov., Isolated from Birch Forest Soil. Curr Microbiol 77: 3799 - 3806 2020 ( DOI 10.1007/s00284-020-02192-z )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Actinoplanes sp. LAM7112 LAM7112

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